Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03137 ATGGGCGCGCGCACCGTCACGGTGCTGAACGTGGCGGAGAAGCCGTCGGTGGCGCGGTCCGTCTCCACCATCTTGTCACGGAATCAGGGCATTCGAATGAGGGAAGGTCGGTCCCGCTACAACAAGATCTTCGAGTTTTCTTACTCCATTCGCGGCCAACCCTGCCACATGCTCTTCACCTCCGTCACCGGCCACCTCATGGAGCTCGAGTTCGACGAACGCTTTCGCAAGTGGCACTCCTGCGACCCCGCCGATCTCTACCACGCTCCTGTCCGAAAATTCGTTCCTGAGGACAAGAAGGATATCAAGAGGACGCTGGAGGAGGAAGCCAGGAGGTGTCAGTGGCTTGTTCTGTGGCTTGACTGTGATAGAGAGGGTGAAAACATTGCATTTGAGGTGGTTGATGTTTGCACCATGGCAAACCAGAATCTTACTATAAAGAGGGCTCGATTTTCTGCGTTGATTGATAGGGAAATTCATCAGGCAGTACAGAATCTGGTTGAGCCAAATAAGTGGTTTGCAGATGCTGTGGATGCTAGGCAAGAAATTGATCTTCGTATTGGTGCTTCTTTCACCAGATTCCAGACCATGTTAATGAAAGATGCTTTTATAATTGACACTGCTTCTGGTGACAGAAATCTTGTCTTAAGTTATGGCCCTTGCCAGTTTCCTACACTTGGATTTGTTGTAGAAAGATATTGGGAGATACAAGCACATGAGCCAGAAGAGTTTTGGACAATCAATTGTTCTCATAGATCAGAAGAAGGTCTTGCTAATTTCAACTGGATGCGGGGTCATTTGTTTGATTATACTTGTGCAGTAGTAATATACGAGATGTGCATTGAGGAACCAACTGCAACTGTCACAGATGTTAAACAACAAGAGAAATTGAAGTATCCTCCTCATCCTCTGAATACCATTGAGCTTGAGAAACGTGCTTCACGATATTTTCGAATGAGTTCTGAGCACACGATGAAGGTGGCAGAAGAGCTTTACCAAGCTGGTTTCATCAGTTATCCTCGTACAGAAACTGATAGTTTTTCTTCAAGGACTGATTTGCATACAATTGTGCAAGAACAACAAGCGCATCCTGAATGGGGAACATATGCACAACGGTTGTTGGACCCTGAGACAGGACTTTGGAGAAATCCTCGTGGTGGTGGACATGATGACAAGGCCCATCCTCCCATTCACCCTACAAAGTTTTCTAGTGGAGAATCCAATTGGAGCCAAGACCACCATAAATTGTATGAGCTGGTTGTTCGCCACTTCTTGGCTTGTGTCTCAAAGCCTGCTGTAGGGGCTGAAACCACAGTTGAAATTGATATTGCTGGTGAACTTTTTCATGCATCTGGAAGGGTGGTTCTAGAGAGAAACTACTTGGATGTTTATCGCTATGAATCTTGGGGTGGAACAATGCTACCAACATATACTGTTGGTCAACAGTTCGTTCCAACAACATTGACCCTTGATTCAGGAGTAACCCGGCCACCACCACTTCTTAGTGAAGCTGATCTTCTTACTTGTATGGACAAGGAGGGTATTGGTACAGATGCTACTATGCATGATCACATAAAAAAGTTGCTTGATCGATTTTATGCAACTAAGGATGCTAACACTCGTTTCACACCAACTAATCTTGGTGAAGCACTTGTTATGGGATATGATGACATGGGGTATAAACTTTGGAAACCATATCTTAGAGCAGCTATGGAACGTGATATGAAATCAGTCAGTGAAGGGACTAAAAGCAAATCTGAAGTTTTGGCAATTAGCTTGCAGCAGATGAAAGCTTGTTTCCTTGATGCCAGAGTGAATAAACTGAAGCTTTTAGAGGCCATGGAGATATTTTTCCAGAGAACTAACAGGGCTGGTGGTGATGAGCTGCATGCAACAGGTGAAGTTGTTCGGCAATGTGGACTTTGCCAAGAATCAGATATGGTGCTAAGGAAAAATCGAGATGGCAATTTTATGGTTGGATGTCTGGGTTACCCTCAGGTTAGATCTCTTGATTTTTCAGTTCCTTCTTATCCTGGACCAGTATTAGAAGCAGATGTTACTGCCAATGCTTGCAACACCTGCACCCCTGGTCCAGTTTACCTGATTAAATTCAAGTTTCGGCGGCTGGAAATACCACCAAACTACAGTGCGGACCATTTGGGTTGCATAGGTGGCTGTGATCAGATTCTTGCGGAGTTGACAGAAATATGTGGCACTGGCTCTCGCACAGGAAGAGCTCGTGGACCAGCTGCACAAACCAACAATGCCCGTCAAAGTAACACAAGACAGGTTGTTTGTATGAACTGCCAAGAAACAGGACATTCTTCTAATGATTGTCCTTCACAAAGGAATGCCCGGCATCGTGGAACAAACCAACAAAATGGTGGGAGGATAGCCTCAACACTGGCACTGGAGGAAGAAATTTTACACGTTCAAGTAGTATTCCACAAGCCAACCGTGGGAGAAATGGTGGCCGTGGATCTCGCGGTAGAGGTAGACACAATGGATCTCATGCTGCTAACACGACTTTTGTGTCAGCCACTGGTGACCCTGTTAGTGGCAGAAGATGCTTTGTGTGTGGTGATCCATCTCACTTTGCTAATGTGTGCCCTATCCGTGGTGGCTAAAGCATGTGCTCAACGATTCAAATCAGCAATATGGAAGGAAAACTAG 2673 0.4557 MGARTVTVLNVAEKPSVARSVSTILSRNQGIRMREGRSRYNKIFEFSYSIRGQPCHMLFTSVTGHLMELEFDERFRKWHSCDPADLYHAPVRKFVPEDKKDIKRTLEEEARRCQWLVLWLDCDREGENIAFEVVDVCTMANQNLTIKRARFSALIDREIHQAVQNLVEPNKWFADAVDARQEIDLRIGASFTRFQTMLMKDAFIIDTASGDRNLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWTINCSHRSEEGLANFNWMRGHLFDYTCAVVIYEMCIEEPTATVTDVKQQEKLKYPPHPLNTIELEKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDSFSSRTDLHTIVQEQQAHPEWGTYAQRLLDPETGLWRNPRGGGHDDKAHPPIHPTKFSSGESNWSQDHHKLYELVVRHFLACVSKPAVGAETTVEIDIAGELFHASGRVVLERNYLDVYRYESWGGTMLPTYTVGQQFVPTTLTLDSGVTRPPPLLSEADLLTCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLGEALVMGYDDMGYKLWKPYLRAAMERDMKSVSEGTKSKSEVLAISLQQMKACFLDARVNKLKLLEAMEIFFQRTNRAGGDELHATGEVVRQCGLCQESDMVLRKNRDGNFMVGCLGYPQVRSLDFSVPSYPGPVLEADVTANACNTCTPGPVYLIKFKFRRLEIPPNYSADHLGCIGGCDQILAELTEICGTGSRTGRARGPAAQTNNARQSNTRQVVCMNCQETGHSSNDCPSQRNARHRGTNQQNGGRIASTLALEEEILHVQVVFHKPTVGEMVAVDLAVEVDTMDLMLLTRLLCQPLVTLLVAEDALCVVIHLTLLMCALSVVAKACAQRFKSAIWKEN 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03137 890 SUPERFAMILY Retrovirus zinc finger-like domains 749 787 IPR036875 GO:0003676|GO:0008270
Aip08g03137 890 Pfam Zinc knuckle 765 781 IPR001878 GO:0003676|GO:0008270
Aip08g03137 890 SUPERFAMILY Prokaryotic type I DNA topoisomerase 8 596 IPR023405 -
Aip08g03137 890 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 329 343 IPR023406 GO:0003917
Aip08g03137 890 ProSiteProfiles Zinc finger CCHC-type profile. 766 781 IPR001878 GO:0003676|GO:0008270
Aip08g03137 890 SMART topIban2 145 246 IPR003601 GO:0003677|GO:0003916|GO:0006265
Aip08g03137 890 PANTHER PROKARYOTIC DNA TOPOISOMERASE 7 704 IPR000380 GO:0003677|GO:0003917|GO:0006265
Aip08g03137 890 MobiDBLite consensus disorder prediction 773 795 - -
Aip08g03137 890 Gene3D Topoisomerase I, domain 3 240 498 IPR013825 -
Aip08g03137 890 Pfam Toprim domain 9 153 IPR006171 -
Aip08g03137 890 Gene3D Topoisomerase I, domain 2 176 600 IPR013824 -
Aip08g03137 890 ProSiteProfiles Toprim domain profile. 7 154 IPR006171 -
Aip08g03137 890 Gene3D - 2 169 - -
Aip08g03137 890 SMART toprim5 7 142 IPR006171 -
Aip08g03137 890 SMART topIaneu2 292 552 IPR003602 GO:0003677|GO:0003916|GO:0006265
Aip08g03137 890 CDD TOPRIM_TopoIA_TopoIII 7 166 IPR034144 -
Aip08g03137 890 PRINTS Prokaryotic DNA topoisomerase I signature 416 432 IPR013497 GO:0003677|GO:0003916|GO:0006265
Aip08g03137 890 PRINTS Prokaryotic DNA topoisomerase I signature 216 234 IPR013497 GO:0003677|GO:0003916|GO:0006265
Aip08g03137 890 PRINTS Prokaryotic DNA topoisomerase I signature 116 129 IPR013497 GO:0003677|GO:0003916|GO:0006265
Aip08g03137 890 PRINTS Prokaryotic DNA topoisomerase I signature 514 528 IPR013497 GO:0003677|GO:0003916|GO:0006265
Aip08g03137 890 PRINTS Prokaryotic DNA topoisomerase I signature 334 343 IPR013497 GO:0003677|GO:0003916|GO:0006265
Aip08g03137 890 Pfam DNA topoisomerase 170 589 IPR013497 GO:0003677|GO:0003916|GO:0006265
Aip08g03137 890 PANTHER DNA TOPOISOMERASE 3-ALPHA 7 704 - -
Aip08g03137 890 Gene3D Topoisomerase I, domain 4 300 430 IPR013826 -
Aip08g03137 890 Gene3D - 732 795 - -
Aip08g03137 890 CDD TOP1Ac 173 600 IPR013497 GO:0003677|GO:0003916|GO:0006265
Aip08g03137 890 SMART c2hcfinal6 765 781 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03137 Aip-Chr8 121594957 121611928 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03137 K03165 - jre:109018851 1347.03