Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03132 ATGGGAAACACTGAGTCATATGAATCTGAAGAAAATCTTTACCAACAATCGTCATCTTATGATCAGAGTTCGGTAAATTCTGTCTATCATCAACCTTCTTCTTATGATAGGAGTTCAATCAATACTACCTATGATCAACCCTCTTCTTATGCTGGGAGTTCGTGGAATACTAGCCACCATCAAACCTCTTCGAATGCTAGGAGTTCAAGCAATACTAGGCCTCAACATAAGCAGCAACCAACATTTATAGCTGACAATTTCAGCTCTTTGGATGAGGTTATTTCTGCTCTAAGAGAAGCTGGTCTTGAATCTTCAAATTTAATTCTTGGTATTGATTTCACAAAAAGCAATGAGTGGACAGGCAAGCACTCATTCCATCGAAAAAGTCTTCATCATATTGGAAACAATCTGAATCCATATGAGCAAGCCATATCTATAATTGGTCGTACTCTTTCTTCTTTTGACGAAGATAACCTGATACCATGTTTTGGTTTTGGTGATGCTTCTACACATGATCAGAATGTGTTCAATTTTTATGCTGATGGTAGATATTGTAACGGCTTTGAAGAAGCACTTGAACGTTATAGACAGATTGTTCCACACTTAAAACTTTCAGGTCCAACGTCATTTGCGCCGGTAATCGATGCAGCAATTGATATTGTGGAGAAAAGCAATGGTCAATATCATGTTCTTGTTATTATTGCTGATGGACAGGTTTCCAGAAATCCAGATGCAGGAGGACGCAAAAGGCTAAGTCCACAAGAACAAGCAACTATTAATTCTATAGTTGCTGCAAGTCACTATCCTCTCTCAATAATTTTGGTTGGTGTTGGAGATGGACCGTGGGATGAGATGCAGCAGTTTGACGATAACATCACGGAGCGCTTATTTGACAACTTTCAGTTTGTGAACTTCACAAAGATCATGTCTGAGAACACAGAAGCATCAAAGAAAGAAACAGCATTTGCACTTGCTGCTCTTATGGAAATTCCATTTCAATACCGAGTTGCCCAAAATATGCAACTTAACAATAGCGACTCACCAGTCTATCATCATAAACGGCCTCTCCCTCCACCAAAGGAAGTAATAGATCATGATAATGCAGTCCCCATGATTCCCCCTGTGACAGAAAAGCTGGAATCAGCTGAGGAAAAAGCTTCAGCTGCTTCAGAGCCGGTGTGTCCTGTTTGCCTGACCAACCCAAAGGACATGGCTTTTGGATGCGGTCATACAACTTGCAAAGAGTGTGGCATGACATTATCTGCATGCCCGTTGTGCCGGCAACAAATTACGACTCGTCTGAGATTGTACACTTGA 1317 0.407 MGNTESYESEENLYQQSSSYDQSSVNSVYHQPSSYDRSSINTTYDQPSSYAGSSWNTSHHQTSSNARSSSNTRPQHKQQPTFIADNFSSLDEVISALREAGLESSNLILGIDFTKSNEWTGKHSFHRKSLHHIGNNLNPYEQAISIIGRTLSSFDEDNLIPCFGFGDASTHDQNVFNFYADGRYCNGFEEALERYRQIVPHLKLSGPTSFAPVIDAAIDIVEKSNGQYHVLVIIADGQVSRNPDAGGRKRLSPQEQATINSIVAASHYPLSIILVGVGDGPWDEMQQFDDNITERLFDNFQFVNFTKIMSENTEASKKETAFALAALMEIPFQYRVAQNMQLNNSDSPVYHHKRPLPPPKEVIDHDNAVPMIPPVTEKLESAEEKASAASEPVCPVCLTNPKDMAFGCGHTTCKECGMTLSACPLCRQQITTRLRLYT 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03132 438 CDD vWA_copine_like 83 334 IPR010734 -
Aip08g03132 438 SMART ring_2 394 426 IPR001841 -
Aip08g03132 438 CDD RING-HC_RGLG_plant 393 437 IPR045317 GO:0061630|GO:0070534
Aip08g03132 438 ProSiteProfiles Zinc finger RING-type profile. 394 427 IPR001841 -
Aip08g03132 438 SUPERFAMILY RING/U-box 385 433 - -
Aip08g03132 438 MobiDBLite consensus disorder prediction 1 82 - -
Aip08g03132 438 SMART VWA_4 104 308 IPR002035 -
Aip08g03132 438 Pfam Copine 129 341 IPR010734 -
Aip08g03132 438 Pfam Zinc finger, C3HC4 type (RING finger) 393 432 - -
Aip08g03132 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 374 438 IPR013083 -
Aip08g03132 438 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RGLG3 63 437 - -
Aip08g03132 438 PANTHER COPINE FAMILY PROTEIN 1 63 437 - -
Aip08g03132 438 SUPERFAMILY vWA-like 105 289 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03132 Aip-Chr8 121520675 121526203 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03132 K16280 - gmx:100776002 672.544