Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g2493 ATGGGCGCGCGCACCGTCACGGTGCTAAACGTGGCGGAGAAGCCGTCGGTGGCGCGGTCCGTCTCCACCATCTTGTCACGGAATCAGGGCATTCGAATGAGGGAAGGTCGCTCCCGCTACAACAAGATCTTCGAGTTTTCTTACTCCATTCGCGGCCAATCCTGCCACATGCTCTTCACCTCCGTCACCGGCCACCTCATGGAGCTCGAGTTCGACGAACGCTTTCGCAAGTGGCACTCCTGCGACCCCGCCGATCTCTACCACGCTCCTGTCCGAAAATCCGTTCCTGAGGACAAGAAGGATATCAAGAGGACGCTGGAGGAGGAAGCCAGGAGGTGTCAGTGGCTTGTTCTGTGGCTTGATTGTGATAGAGAGGGTGAAAACATTGCATTTGAGGTGGTTGATGTTTGCACCATGGCAAACCAGAATCTTACTATAAAGAGGGCTCGATTTTCTGCGTTGATTGATAGGGAAATTCATCAGGCAGTACAGAATCTGGTTGAGCCAAATAAGTGGTTTGCAGATGCTGTGGATGCTAGGCAAGAAATTGATCTTCGTATTGGTGCTTCTTTCACCAGATTTCAGACCATGTTAATGAAAGATGCTTTTATAATTGACACTGCTTCTGGTGACAGAAATCTTGTCTTAAGTTATGGCCCTTGCCAGTTTCCTACACTTGGATTTGTTGTAGAAAGATATTGGGAGATACAAGCACATGAGCCAGAAGAGTTTTGGACAATCAATTGTTCTCATAGATCAGATGAAGGTCTTGCTAATTTCAACTGGATGCGGGGTCATTTGTTTGATTATACTTGTGCAGTAGTAATATACGAGATGTGCATTGAGGAACCAACTGCAACTGTCACAGATGTTAAACAACAAGAGAAATTGAAGTATCCTCCTCATCCTCTGAATACCATTGAGCTTGAGAAACGTGCTTCACGATATTTTCGAATGAGTTCTGAGCACACGATGAAGGTGGCAGAAGAGCTTTACCAAGCTGGTTTCATCAGTTATCCTCGTACAGAAACTGATAGTTTTTCTTCAAGGACTGATTTGCATACAATTGTGCAAGAACAACAAGCGCATCCTGAATGGGGAACATATGCACAACGGTTGTTGGACCCTGAGACAGGACTTTGGAGAAATCCTCGTGGTGGTGGACATGATGACAAGGCCCATCCTCCCATTCACCCTACAAAGTTTTCTAGTGGAGAATCCAATTGGAGCCAAGACCACCATAAATTGTATGAGCTGGTTGTTCGCCACTTCTTGGCTTGTGTCTCAAAGCCTGCTGTAGGGGCTGAAACCACAGTTGAAATTGATATTGCTGGTGAACTTTTTCATGCATCTGGAAGGGTGGTTCTAGAGAGAAACTACTTGGATGTTTATCGCTATGAATCTTGGGGTGGAACAATGCTACCAACATATACTGTTGGTCAACAGTTCGTTCCGACAACATTGACCCTTGATTCAGGAGTAACCCGGCCACCCCCACTTCTTAGTGAAGCTGATCTTCTTACTTGTATGGACAAGGAGGGTATTGGTACAGATGCTACTATGCATGATCACATAAAAAAGTTGCTTGATCGATTTTATGCAACTAAGGATGCTAACACTCGTTTCACACCAACTAATCTTGGCGAAGCACTTGTTATGGGATATGATGACATGGGGTATAAACTTTGGAAACCATATCTGAGAGCAGCTATGGAACGTGATATGAAATCAGTCAGTGAAGGGACTAAAAGCAAATCTGAAGTTTTGGCAACTAGCTTGCAGCAGATGAAAGCTTGTTTCCTTGATGCCAGAGTGAATAAAGTGAAGCTTTTAGAGGCCATGGAGATATTTTTCCAGAGAACTAACAGGGCTGGTGGTGATGAGCTGCATGCAACAGGTGAAGTTGTTCGGCGATGTGGACTTTGCCAAGAATCAGATATGGTGCTAAGGAAAAATCGAGATGGCAATTTTATGGTTGGATGTCTGGGTTACCCTCAGTGCAGGAATGCTGTCTGGCTTCCCGGACCAGTATTAGAAGCAGATGTTACTGCCAATGCTTGCAACACCTGCACCCCTGGTCCAGTTTACCTGATTAAATTCAAGTTTCGGCGGCTGGAAATACCACCAAACTACAGTGCGGACCATTTGGGTTGCATAGGTGGCTGTGATCAGATTCTTGCGGAGTTGACAGAAATATGTGGCACTGGCTCTCGCACAGGAAGAGCTCGTGGACCAGCTGCACAAACCAACAATGCCCGCCAAAGTAACACAAGACAGGTTGTTTGTATGAACTGCCAAGAAACAGGACATTCTTCTAATGATTGTCCTTCACAAAGGAATGCCCGGCATCGTGGAACAAACCAACAAAATGGTGGGAGGATAGCCTCAATACTGGCACTGGAGGAAGAAATTTTACACGTCCGAGTAGTATTCCACAAGCCAACCGTGGGAGAAATGGTGGCCGTGGATCTCGCGGTAGAGGTAGACACAATGGATCTCATGCTGCTAACACAACTTTTGTGTCAGCCACTGGTGACCCTGTTAGTGGTAGAAGATGCTTTGTGTGTGGTGATCCATCTCACTTTGCTAATGTGTGCCCTAACCGTGGTGGCTAAAGCGTGTGCTCAACGATTCAAATCAACAATATGGAAGGAAAACTAG 2661 0.4596 MGARTVTVLNVAEKPSVARSVSTILSRNQGIRMREGRSRYNKIFEFSYSIRGQSCHMLFTSVTGHLMELEFDERFRKWHSCDPADLYHAPVRKSVPEDKKDIKRTLEEEARRCQWLVLWLDCDREGENIAFEVVDVCTMANQNLTIKRARFSALIDREIHQAVQNLVEPNKWFADAVDARQEIDLRIGASFTRFQTMLMKDAFIIDTASGDRNLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWTINCSHRSDEGLANFNWMRGHLFDYTCAVVIYEMCIEEPTATVTDVKQQEKLKYPPHPLNTIELEKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDSFSSRTDLHTIVQEQQAHPEWGTYAQRLLDPETGLWRNPRGGGHDDKAHPPIHPTKFSSGESNWSQDHHKLYELVVRHFLACVSKPAVGAETTVEIDIAGELFHASGRVVLERNYLDVYRYESWGGTMLPTYTVGQQFVPTTLTLDSGVTRPPPLLSEADLLTCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLGEALVMGYDDMGYKLWKPYLRAAMERDMKSVSEGTKSKSEVLATSLQQMKACFLDARVNKVKLLEAMEIFFQRTNRAGGDELHATGEVVRRCGLCQESDMVLRKNRDGNFMVGCLGYPQCRNAVWLPGPVLEADVTANACNTCTPGPVYLIKFKFRRLEIPPNYSADHLGCIGGCDQILAELTEICGTGSRTGRARGPAAQTNNARQSNTRQVVCMNCQETGHSSNDCPSQRNARHRGTNQQNGGRIASILALEEEILHVRVVFHKPTVGEMVAVDLAVEVDTMDLMLLTQLLCQPLVTLLVVEDALCVVIHLTLLMCALTVVAKACAQRFKSTIWKEN* 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g2493 886 ProSiteProfiles Toprim domain profile. 7 154 IPR006171 -
Ahy8g2493 886 PRINTS Prokaryotic DNA topoisomerase I signature 334 343 IPR013497 GO:0003677|GO:0003916|GO:0006265
Ahy8g2493 886 PRINTS Prokaryotic DNA topoisomerase I signature 514 528 IPR013497 GO:0003677|GO:0003916|GO:0006265
Ahy8g2493 886 PRINTS Prokaryotic DNA topoisomerase I signature 116 129 IPR013497 GO:0003677|GO:0003916|GO:0006265
Ahy8g2493 886 PRINTS Prokaryotic DNA topoisomerase I signature 216 234 IPR013497 GO:0003677|GO:0003916|GO:0006265
Ahy8g2493 886 PRINTS Prokaryotic DNA topoisomerase I signature 416 432 IPR013497 GO:0003677|GO:0003916|GO:0006265
Ahy8g2493 886 SUPERFAMILY Prokaryotic type I DNA topoisomerase 8 598 IPR023405 -
Ahy8g2493 886 Gene3D - 751 788 - -
Ahy8g2493 886 Pfam Zinc knuckle 761 777 IPR001878 GO:0003676|GO:0008270
Ahy8g2493 886 Gene3D Topoisomerase I, domain 3 240 498 IPR013825 -
Ahy8g2493 886 Gene3D Topoisomerase I, domain 2 176 600 IPR013824 -
Ahy8g2493 886 PANTHER PROKARYOTIC DNA TOPOISOMERASE 7 700 IPR000380 GO:0003677|GO:0003917|GO:0006265
Ahy8g2493 886 SMART c2hcfinal6 761 777 IPR001878 GO:0003676|GO:0008270
Ahy8g2493 886 CDD TOPRIM_TopoIA_TopoIII 7 166 IPR034144 -
Ahy8g2493 886 Gene3D - 2 169 - -
Ahy8g2493 886 PANTHER DNA TOPOISOMERASE 3-ALPHA 7 700 - -
Ahy8g2493 886 Gene3D Bacterial Topoisomerase I, domain 1 628 673 - -
Ahy8g2493 886 SUPERFAMILY Retrovirus zinc finger-like domains 745 783 IPR036875 GO:0003676|GO:0008270
Ahy8g2493 886 SMART topIban2 145 246 IPR003601 GO:0003677|GO:0003916|GO:0006265
Ahy8g2493 886 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 329 343 IPR023406 GO:0003917
Ahy8g2493 886 Pfam Topoisomerase DNA binding C4 zinc finger 637 674 IPR013498 GO:0003677|GO:0003916|GO:0005694|GO:0006265
Ahy8g2493 886 Pfam DNA topoisomerase 170 589 IPR013497 GO:0003677|GO:0003916|GO:0006265
Ahy8g2493 886 SMART topIaneu2 292 552 IPR003602 GO:0003677|GO:0003916|GO:0006265
Ahy8g2493 886 SMART toprim5 7 142 IPR006171 -
Ahy8g2493 886 MobiDBLite consensus disorder prediction 769 789 - -
Ahy8g2493 886 Gene3D Topoisomerase I, domain 4 300 430 IPR013826 -
Ahy8g2493 886 Pfam Toprim domain 9 153 IPR006171 -
Ahy8g2493 886 ProSiteProfiles Zinc finger CCHC-type profile. 762 777 IPR001878 GO:0003676|GO:0008270
Ahy8g2493 886 CDD TOP1Ac 173 600 IPR013497 GO:0003677|GO:0003916|GO:0006265
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g2493 Ahy-Chr8 47717643 47736652 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g2493 K03165 - jre:109018851 1365.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g2756 18 131212808 131230020 Ahy8g2493 8 47717643 47736652 hybridization