Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01827 ATGAGTGAGTTGACCTTTTTGTTGCAGCAGAGCTCTTTGGGCATGCGCATGCTAGACATCAATGGACCAACATTTGGGGACGGGTTCATTCCATCAACATTAATCCTCGATTCAGGAGTAACCCGACCACCACCACTTTTAAGTGAAGCCGATTTGCTGAGTTGTATGGACAAGGAGGGTATTGGTACAGATGCTACAATGCATGATCACATCAAGAAGCTACTTGATCGATTTTATGCAACTAAGGATGCTAACACTCGTTTCACACCAACTAATCTTGGTGAGGCACTTGTCATGGGATATGACGACATGGGGTACAAACTATGGAAACCTTATCTTAGAGCAGTTATGGAACGTGACATGAAATTTGTTAGTGAAGGAAATAAAAGCAAAGCTGATGTTTTGGCAACTAGCTTGCAGCTGATGGAGGCTTGTTTCCTAGATGCAAGATTGAATAAAGGAAAACTTTTAGAAGCCATGGCAATATTTTTTGAAAGGTACTTTTCATCCTTCATTCATATGGACTCCTTATGCAAAATGCTAATAGGTATCTTCAATCGCTATTGCAGATCTAGTAGATCGGGCAATGATGAGCTACATGCAATGGGGGTTGTTCGACGATGCGGACTTTGTCAAGAATCAGACATGGTGCTAAGGAAAAATCGATGTAGGAATGCTGTCTGGCTCCCTGGATCACTATCAGAAGCGGTTGTGACCACCAATACGTGCAATATCTGTACTCCTGGATGCATTGGTGGCTGTGACGAGATTCTTTCACAGATGACAGAAATATGTGGCAGGGGATCTCGCATGCCAGCAAGACCTCGAGGACCAACTGCGCCACCGAGCAATGCCCATCATACTAACCCACGACAAAGACCTTGTGTGAACTGTCAAGAAACAGGTCATTCTTCTAATGATTGTCCTTTACGCTCTGGGAATGTCGGACATCGTGGAAGAAGTGAACATAATGGTAACGTTTCTGTGGATTTTAAAATCCTATTCCAATGGGAGGATAGCCTCAATGATGGAACTGGAGGCAGAAGTGCATCGCGTTCAAATAGTATTCCATCCTCCAATCCCAGGCGAGCTGGTGGGCGTGGATATGGTGGTAGAGGTGGCCAGACTGGAGCTCATGCTGCTGCCACAACATTTGTTTCGGCAACCGGAGATCCTATTTCGGGTAGAAGGTGCTTTAGGTGTGGTGATCCATCTCACTTTGCAAATGTCTGTCCCAATCGTGGTGTCTGA 1251 0.45 MSELTFLLQQSSLGMRMLDINGPTFGDGFIPSTLILDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLGEALVMGYDDMGYKLWKPYLRAVMERDMKFVSEGNKSKADVLATSLQLMEACFLDARLNKGKLLEAMAIFFERYFSSFIHMDSLCKMLIGIFNRYCRSSRSGNDELHAMGVVRRCGLCQESDMVLRKNRCRNAVWLPGSLSEAVVTTNTCNICTPGCIGGCDEILSQMTEICGRGSRMPARPRGPTAPPSNAHHTNPRQRPCVNCQETGHSSNDCPLRSGNVGHRGRSEHNGNVSVDFKILFQWEDSLNDGTGGRSASRSNSIPSSNPRRAGGRGYGGRGGQTGAHAAATTFVSATGDPISGRRCFRCGDPSHFANVCPNRGV 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01827 416 MobiDBLite consensus disorder prediction 282 298 - -
Vimu10g01827 416 SUPERFAMILY Retrovirus zinc finger-like domains 391 414 IPR036875 GO:0003676|GO:0008270
Vimu10g01827 416 MobiDBLite consensus disorder prediction 268 298 - -
Vimu10g01827 416 ProSiteProfiles Zinc finger CCHC-type profile. 396 413 IPR001878 GO:0003676|GO:0008270
Vimu10g01827 416 Gene3D - 283 415 - -
Vimu10g01827 416 SUPERFAMILY Retrovirus zinc finger-like domains 280 315 IPR036875 GO:0003676|GO:0008270
Vimu10g01827 416 Gene3D Topoisomerase I, domain 2 34 167 IPR013824 -
Vimu10g01827 416 MobiDBLite consensus disorder prediction 343 361 - -
Vimu10g01827 416 PANTHER PROKARYOTIC DNA TOPOISOMERASE 25 303 IPR000380 GO:0003677|GO:0003917|GO:0006265
Vimu10g01827 416 SUPERFAMILY Prokaryotic type I DNA topoisomerase 25 212 IPR023405 -
Vimu10g01827 416 Pfam Zinc knuckle 294 309 IPR001878 GO:0003676|GO:0008270
Vimu10g01827 416 ProSiteProfiles Zinc finger CCHC-type profile. 295 309 IPR001878 GO:0003676|GO:0008270
Vimu10g01827 416 SMART c2hcfinal6 294 310 IPR001878 GO:0003676|GO:0008270
Vimu10g01827 416 SMART c2hcfinal6 397 413 IPR001878 GO:0003676|GO:0008270
Vimu10g01827 416 Pfam DNA topoisomerase 33 135 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vimu10g01827 416 MobiDBLite consensus disorder prediction 343 377 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01827 K03165 - gmx:100818971 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01827 10 25852951 25863388 Vimu10g01827 10 25852951 25863388 ECH