Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01874 ATGGGAAATACAGAGTCAATGTATGAATCTGAAGATAATTTTTACCAGCATCCCCCTTATTATGCTGGGAGTTCAGTGAACAATACCTATCGTCAGCCGTCTCCATATACTGGGAATTTGGAGAATACTACCAATCATGAATCATCTTCTTATGCTGGGGATTATTCTAATGCTACCTATCATCAATCCTCTACTTATGCTCGGAGCTCAGCGAACACTCGGCATAAAAAAAGGCAGCAACCCACATATATAGCTGATCATTTCAGCTCACTGGATCAGGTTGTTTCTGCTCTTAGAGAAGCTGGTTTGGAATCTTCAAATTTAATACTTGGTATTGACTTCACCAAAAGCAATGAGTGGACAGGCAAGCACTCGTTCCATCGAAAAAGCCTTCATCGTATCGGAATCAATCCTAATCCATATGAGCAAGCTATCTCCATCATTGGTCGTACTCTGTCTTCCTTTGATGAAGACAATCTGATACCATGTTTTGGATTTGGTGATGCTTCTACACGTGATAAGAATGTGTTCAGTTTTTATCAAGATAATAGATTTTGTCATGGTTTTGAGGAAGTACTTGCACGCTACAGAGAGATTGTTCCATACTTAAAGCTGTCAGGTCCAACATCGTTTGCCCCTGTAATCGATGCAGCAATTGACATCGTGGAAAGAAACAACGGTCAATATCATGTTCTTGTCATTATTGCTGATGGACAGGTTACCAGAAATCCAGATACACCACACGGAAAGCTTAGTCCACAAGAACAAGCAACCATTAGTTCCATCATTGCTGCAAGTCACCATCCTCTCTCAATTATTTTGGTCGGCGTTGGAGATGGGCCATGGGATGAGATGAAGCATTTTGATGATAACATTACTGAGCGCGTATTTGACAACTTTCAGTTTGTGAACTTCACGAAAATCATGTCCGAGAACACAGAAGAATCAAAGAAGGAAGCAGTGTTTGCACTTGCTGCCCTTATGGAAATTCCATTTCAGTACCGGGCTGCCCAAAATATACAACTTACTGATAGAGAATCAGTTCTTCATCAACATAGAAGGCCGCTCCCTCCACCTAATGAAGTAATTGATCATGATAATGCACGCATGGCAATCCCGCACAAGACAAATTTGGAATCAGTTGAACCATCAACTCCAGCTGGTATCGAACCAGTATGCCCCATTTGTCTTACCAACCCGAAGGACATGGCTTTTGGATGTGGTCACACAACTTGCAAGGAGTGTGGCTCGACGTTATCTTCATGCCCAATGTGCCGGAAGCCAATTACAACTCGTCTGAGATTGTACACTTGA 1314 0.4201 MGNTESMYESEDNFYQHPPYYAGSSVNNTYRQPSPYTGNLENTTNHESSSYAGDYSNATYHQSSTYARSSANTRHKKRQQPTYIADHFSSLDQVVSALREAGLESSNLILGIDFTKSNEWTGKHSFHRKSLHRIGINPNPYEQAISIIGRTLSSFDEDNLIPCFGFGDASTRDKNVFSFYQDNRFCHGFEEVLARYREIVPYLKLSGPTSFAPVIDAAIDIVERNNGQYHVLVIIADGQVTRNPDTPHGKLSPQEQATISSIIAASHHPLSIILVGVGDGPWDEMKHFDDNITERVFDNFQFVNFTKIMSENTEESKKEAVFALAALMEIPFQYRAAQNIQLTDRESVLHQHRRPLPPPNEVIDHDNARMAIPHKTNLESVEPSTPAGIEPVCPICLTNPKDMAFGCGHTTCKECGSTLSSCPMCRKPITTRLRLYT 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01874 437 MobiDBLite consensus disorder prediction 25 56 - -
Spst9g01874 437 PANTHER COPINE FAMILY PROTEIN 1 45 414 - -
Spst9g01874 437 SUPERFAMILY RING/U-box 392 432 - -
Spst9g01874 437 ProSiteProfiles Zinc finger RING-type profile. 393 426 IPR001841 -
Spst9g01874 437 SMART VWA_4 105 308 IPR002035 -
Spst9g01874 437 SUPERFAMILY vWA-like 106 289 IPR036465 -
Spst9g01874 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 383 437 IPR013083 -
Spst9g01874 437 Pfam Zinc finger, C3HC4 type (RING finger) 392 431 - -
Spst9g01874 437 SMART ring_2 393 425 IPR001841 -
Spst9g01874 437 Pfam Copine 130 343 IPR010734 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01874 Spst-Chr9 24709046 24720174 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01874 K16280 - gmx:100776002 773.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01874 9 24709046 24720174 Spst9g01874 9 24709046 24720174 ECH