Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01880 ATGTCTATAAATGGAATCATTGTCACAGATGTCATTTTGGAGGGTTGGATCTGTGCTCATATGAACTTTCTGGCGAGATTGAATAAAGTTAAACTTTTAGAAGCCATGGCAATATTTTTTGAAAGATCTAGTAGATCTGGCAATGACGAGATGCATGTAACTGGAGAAGTTGTTCGAAGATGTGGACTTTGTCAAGAATCAGACATGGTGCTTAGGAAAAATCGAGATGGCAATTTTATGGTTGGATGTTTGGGTTACCCTCAGTGTAGAAATGCTGTTTGGCTCCCTGGATCACTATCAGAAGCAGTTGTGACCACCAATACATGCAATATTTGTACTCCTGGTCCTGTTTACTTAATTCAGTTCAAGTTTAGGCAGCTCGAAATTCCACCAAACTACAGTGCCAATCATTTGGGTTGCATTGGTGGCTGTGATGAGATTCTGGCACAGTTGACAGAAATATGTGGTAGGGGCTCTCGCATGCCAGCAAGACCTCGAGGTCCAACTGCACCAACCAGCAATGTCCATCATACAAACCCCAGGCAAGGAGCTTGCGTGAACTGTCAAGAAACAGGACATTCTTCTTATGACTGTCCTTTACGTACTGGGAATGTTCGACAGCGTGGAATGAGTGAAAATAATGGGGAAGCTTCTGTTTCATGCAATTCGTGTGGAACACCATGTGTTTTGAGAACTGCGAATACTGCAAATAACAGGGGAAGGAAGTTCTATTCATGTCAATCACAGGAATGCAACTTTTTTGTGTGGGAGGATAGCCTCAATGATGCCACTGGAGGCAGAAGTGCCACACGTTCAAATAGTATTCCATCCTCCAATTCTAGACAAAGTGGTGGACGTGGATCTCGTGGTAGAGGTGGCCGGACTGGAGCTAATACCGCTAGCACAACATTTGTGTCAGCGACCGGAGATCCTATTTCTGGTAGAAGATGTTTTAGGTGTGGTGATCCATCTCACTTTGCAAATGTCTGTCCCAATCGTGGTGTCTGA 1008 0.4395 MSINGIIVTDVILEGWICAHMNFLARLNKVKLLEAMAIFFERSSRSGNDEMHVTGEVVRRCGLCQESDMVLRKNRDGNFMVGCLGYPQCRNAVWLPGSLSEAVVTTNTCNICTPGPVYLIQFKFRQLEIPPNYSANHLGCIGGCDEILAQLTEICGRGSRMPARPRGPTAPTSNVHHTNPRQGACVNCQETGHSSYDCPLRTGNVRQRGMSENNGEASVSCNSCGTPCVLRTANTANNRGRKFYSCQSQECNFFVWEDSLNDATGGRSATRSNSIPSSNSRQSGGRGSRGRGGRTGANTASTTFVSATGDPISGRRCFRCGDPSHFANVCPNRGV 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01880 335 ProSiteProfiles Zinc finger CCHC-type profile. 315 332 IPR001878 GO:0003676|GO:0008270
Spst9g01880 335 Gene3D Bacterial Topoisomerase I, domain 1 45 97 - -
Spst9g01880 335 PANTHER OS07G0190500 PROTEIN 184 332 - -
Spst9g01880 335 FunFam DNA topoisomerase I 47 99 - -
Spst9g01880 335 MobiDBLite consensus disorder prediction 264 307 - -
Spst9g01880 335 ProSiteProfiles Zinc finger CCHC-type profile. 185 199 IPR001878 GO:0003676|GO:0008270
Spst9g01880 335 SMART c2hcfinal6 316 332 IPR001878 GO:0003676|GO:0008270
Spst9g01880 335 SMART c2hcfinal6 184 200 IPR001878 GO:0003676|GO:0008270
Spst9g01880 335 Pfam Zinc knuckle 184 199 IPR001878 GO:0003676|GO:0008270
Spst9g01880 335 Pfam GRF zinc finger 220 259 IPR010666 GO:0008270
Spst9g01880 335 ProSiteProfiles Zinc finger GRF-type profile. 221 260 IPR010666 GO:0008270
Spst9g01880 335 SUPERFAMILY Retrovirus zinc finger-like domains 173 207 IPR036875 GO:0003676|GO:0008270
Spst9g01880 335 SUPERFAMILY Retrovirus zinc finger-like domains 308 333 IPR036875 GO:0003676|GO:0008270
Spst9g01880 335 Pfam Topoisomerase DNA binding C4 zinc finger 59 96 IPR013498 GO:0003677|GO:0003916|GO:0005694|GO:0006265
Spst9g01880 335 MobiDBLite consensus disorder prediction 264 286 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01880 K03165 - gmx:100818971 543.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01880 9 24865220 24880820 Spst9g01880 9 24865220 24880820 ECH