Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0841 ATGGGGAGCCGCACCGTGACGGTGCTGAACGTGGCGGAGAAGCCGTCGGTGGCGAAGTCGGTGTCCACCATCCTGTCCCGCAACCAGGGAGTCCGGGTGAGGGACGGTCGGTCCCGCTACAACAAGATCTTCGAGTTCTCTTACTCCATCCGCGGCCAGCCTTGCCACATGCTCTTCACTTCCGTCATCGGCCACCTCATGGAGCTCGAGTTCCAAGATCGCTTCCGCAAGTGGCACTCCTGCGACCCCGCCGATCTCTACCACGCTCCCGTCCATAAACACGTTCCCGAGGACAAGAAGGATATCAAGAGGACGCTGGAAGAGGAAGCTAGGAGGTGCCAGTGGCTTGTTCTGTGGCTCGATTGTGATAGAGAGGGTGAAAACATTGCGTTTGAGGTGGTTGATGTTTGCACCGCAGCAAATCGGAATCTTACGATAAAGAGGGCTAGATTTTCTGCTTTGATTGATAGGGAAATTCATCAGGCGGTGCAGAATCTTGTTGACCCGAATAAATGGTTTGCTGATGCTGTGGATGCTAGGCAAGAAATAGATCTTCGTATCGGTGCTTCTTTCACCAGATTCCAGACCATGTTAATGAGGGATGCTTTTATAATTGACACTGCTACTGATGACAGAAATCTTGTCTTAAGTTATGGCCCCTGCCAGTTCCCAACGCTTGGGTTTGTTGTGGAAAGATACTGGGAGATACAAGCGCATGAGCCAGAAGAGTTTTGGTCAATCAATTGTTCTCATACATCAGATGAAGGTGTTGCTAATTTCAGCTGGATGCGGGGCAATCTGTTTGATTATACTTGTGCAGTAGTAATATATGAAATGTGCATTGAGGAGCCAACTGCAACTGTCACAAATGTTAAACAACAGGAGAAACTAAAGTATCCTCCACATCCTCTAAACACCATCGAGCTCGAGAAACGTGCTTCACGATATTTTCGGATGAGTTCTGAGCACACAATGAAGGTAGCAGAAGAACTTTACCAAGCTGGTTTCATCAGTTATCCTCGCACAGAAACAGATAGCTTTTCTTCAAGGACTGATTTGCATGCAATTGTGCAAGAACAACAGGGGCATCCTGAGTGGGGAACATATGCACAGCGGTTGTTGGACACAGGGGCAGGACTCTGGAGAAATCCTAGAGGTGGTGGACATGATGACAAGGCCCATCCGCCCATTCATCCCACAAAATTTTCTGCCGGAGAACCCAGCTGGAGCCAAGACCACCGTAAATTGTATGAGCTGGTTGTTCGCCATTTCCTGGCTTGTGTCTCAAAGCCTGCCGTAGGAGCTGAAACCACAGTTGAAATTGATATTGCTGGTGAACTGTTTTCTGCATCTGGAAGGGTTATTCTAGAGAAAAACTACTTGGATGTTTATCGCTATGAATCTTGGGGTGGATCAATGCTTCCAACGTATATTGTTGGTCAACAGTTTATTCCAACAACGTTGACCCTTGATTCAGGAGTAACCCGGCCACCACCACTTTTGAGTGAAGCTGATCTGCTGAGTTGTATGGACAAGGAGGGTATTGGTACAGATGCTACTATGCATGATCACATAAAGAAGCTGCTTGATCGATTTTATGCAACTAAAGATGCTAGCACTCGTTTCACACCAACCAATCTTGGTGAGGCACTTGTTATGGGATACGATGACATGGGGTATAAACTTTGGAAGCCATATCTTAGAGCAGCTATGGAACGTGACATGAAATCTGTCAGTGAAGGAACTAAAAGCAAAGCTGAAGTTTTGGCAACTAGCTTGCAGCAGATGAAAGCTTGTTTCCTTGATGCAAGATTGAATAAAGTGAAACTTTTAGAAGCCATGGCAATATTTTTCGAAAGATCTAACAGATCTGGTGGTGATGAGCTGCATGCAACTGGAGAAGTTGTTCGGCGATGTGGACTTTGCCAAGAATCAGACATGGTGCTAAAGAAAAATCGAGATGGCAATTTTATGGTTGGATGTATGGGATTCCCTCAGTGTAGAAATGTTGTCTGGCTTCCTGGATCAGTATCAGAAGCAGCTGTGACTACCAATACTTGCAACTTCTGTACTCCTGGTCCAGTTTACCTGATTCAATTCAAGTTTCGGCAGCTGGAAATACCTCCAAACTACAATGTCAACCATTTGGGTTGCATTGGTGGGTGTGATGAGACTCTTACACAGTTGACAGAAATATGTGGCACTGGTCCTCGCATGGCAGCAAGAGCTCGTGGACCAGCTGCACCAACCGGCAATGCCCGCCAAAGTGACACAAGGCAAGATGTTTGTATGAACTGTCAAGAAACAGGGCATTCTTCTAACGATTGTCCTTCACAGAGGAATATCCGACATCGTGGAACAAGCCAACAAAGTGGGGACGCTTCTGTTTCATGCAGTTCGTGTGGAGCACCATGTGTTCTGCGAACTGCAAATACAGAAAATAACAGGGGAAGGAAGTTCTACTCATGTCAATCGCAGGAGTGTAACTTTTTTGTATGGGAGGATAGCCTCAACAATGGCACTGGAGGAAGAAGTTTTACACGGTCAAATAGTATTCCAGCATCCAACCCTAGCAGAAATGGTGGTCGTGGACCTCGTGGTAGAGGTAGACGTAATGGATCTCATGCTGCTAATGCGACTTTTGTGTCAGCCACTGGTGAACCTATTTCTGGTAGAAGGTGCTTTGTGTGTGGTGATCCATCTCACTTTGCTAATGTGTGCCCCAATCGAGGAGTCTGA 2739 0.4666 MGSRTVTVLNVAEKPSVAKSVSTILSRNQGVRVRDGRSRYNKIFEFSYSIRGQPCHMLFTSVIGHLMELEFQDRFRKWHSCDPADLYHAPVHKHVPEDKKDIKRTLEEEARRCQWLVLWLDCDREGENIAFEVVDVCTAANRNLTIKRARFSALIDREIHQAVQNLVDPNKWFADAVDARQEIDLRIGASFTRFQTMLMRDAFIIDTATDDRNLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWSINCSHTSDEGVANFSWMRGNLFDYTCAVVIYEMCIEEPTATVTNVKQQEKLKYPPHPLNTIELEKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDSFSSRTDLHAIVQEQQGHPEWGTYAQRLLDTGAGLWRNPRGGGHDDKAHPPIHPTKFSAGEPSWSQDHRKLYELVVRHFLACVSKPAVGAETTVEIDIAGELFSASGRVILEKNYLDVYRYESWGGSMLPTYIVGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDASTRFTPTNLGEALVMGYDDMGYKLWKPYLRAAMERDMKSVSEGTKSKAEVLATSLQQMKACFLDARLNKVKLLEAMAIFFERSNRSGGDELHATGEVVRRCGLCQESDMVLKKNRDGNFMVGCMGFPQCRNVVWLPGSVSEAAVTTNTCNFCTPGPVYLIQFKFRQLEIPPNYNVNHLGCIGGCDETLTQLTEICGTGPRMAARARGPAAPTGNARQSDTRQDVCMNCQETGHSSNDCPSQRNIRHRGTSQQSGDASVSCSSCGAPCVLRTANTENNRGRKFYSCQSQECNFFVWEDSLNNGTGGRSFTRSNSIPASNPSRNGGRGPRGRGRRNGSHAANATFVSATGEPISGRRCFVCGDPSHFANVCPNRGV* 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0841 912 Gene3D - 2 169 - -
Dod09g0841 912 Gene3D Bacterial Topoisomerase I, domain 1 628 674 - -
Dod09g0841 912 Gene3D Topoisomerase I, domain 4 300 430 IPR013826 -
Dod09g0841 912 Pfam GRF zinc finger 797 836 IPR010666 GO:0008270
Dod09g0841 912 PRINTS Prokaryotic DNA topoisomerase I signature 216 234 IPR013497 GO:0003677|GO:0003916|GO:0006265
Dod09g0841 912 PRINTS Prokaryotic DNA topoisomerase I signature 334 343 IPR013497 GO:0003677|GO:0003916|GO:0006265
Dod09g0841 912 PRINTS Prokaryotic DNA topoisomerase I signature 514 528 IPR013497 GO:0003677|GO:0003916|GO:0006265
Dod09g0841 912 PRINTS Prokaryotic DNA topoisomerase I signature 416 432 IPR013497 GO:0003677|GO:0003916|GO:0006265
Dod09g0841 912 PRINTS Prokaryotic DNA topoisomerase I signature 116 129 IPR013497 GO:0003677|GO:0003916|GO:0006265
Dod09g0841 912 Pfam DNA topoisomerase 171 589 IPR013497 GO:0003677|GO:0003916|GO:0006265
Dod09g0841 912 Gene3D Topoisomerase I, domain 2 176 600 IPR013824 -
Dod09g0841 912 Gene3D Topoisomerase I, domain 3 240 498 IPR013825 -
Dod09g0841 912 MobiDBLite consensus disorder prediction 770 796 - -
Dod09g0841 912 CDD TOPRIM_TopoIA_TopoIII 7 166 IPR034144 -
Dod09g0841 912 MobiDBLite consensus disorder prediction 842 858 - -
Dod09g0841 912 Pfam Toprim domain 9 153 IPR006171 -
Dod09g0841 912 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 329 343 IPR023406 GO:0003917
Dod09g0841 912 ProSiteProfiles Zinc finger CCHC-type profile. 763 778 IPR001878 GO:0003676|GO:0008270
Dod09g0841 912 SUPERFAMILY Retrovirus zinc finger-like domains 745 784 IPR036875 GO:0003676|GO:0008270
Dod09g0841 912 SMART c2hcfinal6 762 778 IPR001878 GO:0003676|GO:0008270
Dod09g0841 912 SMART c2hcfinal6 893 909 IPR001878 GO:0003676|GO:0008270
Dod09g0841 912 ProSiteProfiles Toprim domain profile. 7 152 IPR006171 -
Dod09g0841 912 ProSiteProfiles Zinc finger CCHC-type profile. 892 909 IPR001878 GO:0003676|GO:0008270
Dod09g0841 912 SMART toprim5 7 142 IPR006171 -
Dod09g0841 912 SMART topIban2 145 246 IPR003601 GO:0003677|GO:0003916|GO:0006265
Dod09g0841 912 PANTHER DNA TOPOISOMERASE 3-ALPHA 7 700 - -
Dod09g0841 912 SUPERFAMILY Prokaryotic type I DNA topoisomerase 8 598 IPR023405 -
Dod09g0841 912 Pfam Topoisomerase DNA binding C4 zinc finger 637 674 IPR013498 GO:0003677|GO:0003916|GO:0005694|GO:0006265
Dod09g0841 912 SMART topIaneu2 292 552 IPR003602 GO:0003677|GO:0003916|GO:0006265
Dod09g0841 912 Gene3D - 751 790 - -
Dod09g0841 912 MobiDBLite consensus disorder prediction 842 881 - -
Dod09g0841 912 PANTHER PROKARYOTIC DNA TOPOISOMERASE 7 700 IPR000380 GO:0003677|GO:0003917|GO:0006265
Dod09g0841 912 CDD TOP1Ac 173 600 IPR013497 GO:0003677|GO:0003916|GO:0006265
Dod09g0841 912 Pfam Zinc knuckle 762 778 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0841 Dod-Chr9 26676990 26701426 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0841 K03165 - tcc:18611919 1546.18