Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1396 ATGTTGTGTGATTCAAGCATGCTTTTATATTTACCTGATGATGTGTTTGCTATAATTTCTAGATCCTTTTCACCAAAAGATATATGTAATCTGAGTTTATGCTGCAAGAGCTTGAATACTCTCGTGGCTTCTGAAAAAATCTGGTTAACTCAATGTGAAGTTTTGAGTATAGTGCCTCATAAGGATCTTGTTGAGTGGAGAAAGGGTGTGTCTTGTTATAAGGCACTTTGTCGTTTTCTGGTGAAAGTTCAACCGTTGATTGGGATATGGGTTCATCAGAATCCGGAGCTGGGGAATGTTGTGTATGTGATGCCTGGTTTTGTTTCTGTTGTTGGTTGTAGGATAATTCCTCAAGAGCTTGGTCCGTTAGGTATGGAGGATGGTCCGATTCTATGGGCGTCTGTTTTCGAAGTTGTTGCTGATTTTGATGGTTCGACTATGTTTTTCCTTCATGGAAGGGAAAAGGGTGTGGATTATGTGTATCCTGGTTTGGCTAAGTCGATTGATAAATTTTGCAATATATTGTTGCTTGAGGTTGAGCCGGAGAAAAATAAAAATGTTGGTTCTTTGTTGGAGAGTAAGAGTTTTGTGCATTCGTCGGGTTTGGAGTTGTCTAGGAAGGTTGGTAGGTCGAATAGTGATATTTGTAGGTCACAAATTGTGATGGGAAATAGTGAGGGAAATGTTAGCTTTAGCAGATTAGCTTTTTCTGATAGAAGAAAGTTGCTTGAGGTTACTACTAGCCAAGTTCGACAAAAGGTTATGGATGCGGTGATAGGACCGTTGTTTCCTAGGTTGAGGGACGATGAGGAAAACTTTCAGAAAGATTTGGTGCTCTTGAGGGAAAGGATACTAGTCCTTAGACAAATACACAGGCTTGGTTGTAGTGAGATGGAGATGGAGGATTATAAGGCAAATTCGCAGGGTGTAGTTGGTGCAACACAGTTAGACTTCGATGATAAACGTTCTAGGGCCGTGCCTGATTCTCTGTTTGAGGAGGATGGTGGCGTACAATGTGTCAAGAGAAAAGGAATTCGCGGATATTTCTGGAATAGTCTTAAACATATTCTAGGAAGATCAAATTCAGTTAATGACAGTCATTCAGCTTCCAAGAAGCTTACTACAAACGGTGAGATTAGGCATGCTAGACTTCAAGAGTTTCTTAGATCGAGTGACACAATAAGACTAACTTTGAATGCCTCGAATATGAAACTGTCCTCTTATAGAGCATGGCCGAATATGCACGACAGTAGGTATGCACTTTACAAGTTACCTTTGCGAGTTCCTGGTGCTGACCATGAATATGCTGGATTATGGGGAGGTGCTTTTGGTTGGCCTCCCGGGAAGCCTTCCGAAGACAAGCCTGGAAAGGCTTTGTTTTTTCTTCTCCTCTCTTACGAGGAGTTTCAGGGTCAACAACTTCTCATTGCAACCAAAATATTGGAAGGCACACACTATGTCTTGCATCCTAATGGTTCCGCAATGTTTATAGCCAATGTCAACGAACCTTCCTCCGAACCTTTTCCTTGGAACACTGATGCAGATTCATTGCCGGTGAATATCAAGCATGCTTTCACCGGAGAGGGTATTGCGAGTGGTTATGGGTTTAGATATCCTGGATCAAAGCCAGGCTCACTCTTTGTTTTTCATAATGGTGTAATTGCATTCATTTGGAAGGAAACAAAGGCGGTGTTGACCTTGCAAAGACTTAACTTGCAAGAACTTTTGAAGAAGGGTGAAAGAATACCTTCTCTACTTCCCATTGCCAACTTTTCATATCTGACAAAGTCCTACTCGAATGTGTTTGCCGGCATTCCCACCTCTTCCAGTTCTCTGTCTTCACCAAGGAAAGGACGACGCTAG 1863 0.4187 MLCDSSMLLYLPDDVFAIISRSFSPKDICNLSLCCKSLNTLVASEKIWLTQCEVLSIVPHKDLVEWRKGVSCYKALCRFLVKVQPLIGIWVHQNPELGNVVYVMPGFVSVVGCRIIPQELGPLGMEDGPILWASVFEVVADFDGSTMFFLHGREKGVDYVYPGLAKSIDKFCNILLLEVEPEKNKNVGSLLESKSFVHSSGLELSRKVGRSNSDICRSQIVMGNSEGNVSFSRLAFSDRRKLLEVTTSQVRQKVMDAVIGPLFPRLRDDEENFQKDLVLLRERILVLRQIHRLGCSEMEMEDYKANSQGVVGATQLDFDDKRSRAVPDSLFEEDGGVQCVKRKGIRGYFWNSLKHILGRSNSVNDSHSASKKLTTNGEIRHARLQEFLRSSDTIRLTLNASNMKLSSYRAWPNMHDSRYALYKLPLRVPGADHEYAGLWGGAFGWPPGKPSEDKPGKALFFLLLSYEEFQGQQLLIATKILEGTHYVLHPNGSAMFIANVNEPSSEPFPWNTDADSLPVNIKHAFTGEGIASGYGFRYPGSKPGSLFVFHNGVIAFIWKETKAVLTLQRLNLQELLKKGERIPSLLPIANFSYLTKSYSNVFAGIPTSSSSLSSPRKGRR* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1396 620 SUPERFAMILY F-box domain 5 63 IPR036047 GO:0005515
Psa5g1396 620 Pfam F-box domain 11 49 IPR001810 GO:0005515
Psa5g1396 620 Pfam Cyclin D1 binding domain 516 573 - -
Psa5g1396 620 ProSiteProfiles F-box domain profile. 5 51 IPR001810 GO:0005515
Psa5g1396 620 PANTHER F-BOX PROTEIN FAMILY-LIKE 2 617 - -
Psa5g1396 620 PANTHER F-BOX PROTEIN FAMILY-LIKE 2 617 IPR040275 -
Psa5g1396 620 SMART fbox_2 11 51 IPR001810 GO:0005515
Psa5g1396 620 Gene3D - 2 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1396 Psa-Chr5 108303121 108306077 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1396 - - gmx:100814383 942.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1396 5 108303121 108306077 Psa5g1396 5 108303121 108306077 ECH