Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g02582 ATGGGCGCGCGCACCGTCACGGTGCTGAACGTGGCGGAGAAGCCGTCGGTGGCGCGGTCCGTCTCCACCATCTTGTCACGGAATCAGGGCATTCGAATGAGGGAAGGTCGCTCCCGCTACAACAAGATCTTCGAGTTTTCTTACTCCATTCGCGGCCAACCCTGCCACATGCTCTTCACCTCCGTCACCGGCCACCTCATGGAGCTCGAGTTCGACGAACGCTTTCGCAAGTGGCACTCCTGTGACCCCGCCGATCTCTACCACGCTCCTGTCCGAAAATCCGTTCCTGAGGACAAGAAGGATATCAAGAGGACGCTGGAGGAGGAAGCCAGGAGGTGTCAGTGGCTTGTTCTGTGGCTTGATTGTGATAGAGAGGGTGAAAACATTGCATTTGAGGTGGTTGATGTTTGCACCATGGCAAACCAGAATCTTACTATAAAGAGGGCTCGATTTTCTGCGTTGATTGATAGGGAAATTCATCAGGCAGTACAGAATCTGGTTGAGCCAAATAAGTGGTTTGCAGATGCTGTGGATGCTAGGCAAGAAATTGATCTTCGTATTGGTGCTTCTTTCACCAGATTCCAGACCATGTTAATGAAAGATGCTTTTATAATTGACACTGCTTCTGGTGACAGAAATCTTGTCTTAAGTTATGGCCCCTGCCAGTTTCCTACACTTGGATTTGTTGTAGAAAGATATTGGGAGATACAAGCACATGAGCCAGAAGAGTTTTGGACAATCAATTGTTCGCATAGATCAGATGAAGGTCTTGCTAATTTCAACTGGATGCGGGGTCATTTGTTTGATTATACTTGTGCAGTAGTAATATACGAGATGTGCATTGAGGAACCAACTGCAACTGTCACAGATGTTAAACAACAAGAGAAATTGAAGTATCCTCCTCATCCTCTGAATACCATTGAGCTTGAGAAACGTGCTTCACGATATTTTCGAATGAGTTCTGAGCACACGATGAAGGTGGCAGAAGAGCTTTACCAAGCTGGTTTCATCAGTTATCCTCGTACAGAAACTGATAGTTTTTCTTCAAGGACTGATTTGCATACAATTGTGCAAGAACAACAAGCGCATCCTGAATGGGGAACATATGCACAACGGTTGTTGGACCCTGAGACAGGACTTTGGAGAAATCCTCGTGGTGGTGGACATGATGACAAGGCCCATCCTCCCATTCACCCTACAAAGTTTTCTAGTGGAGAATCCAATTGGAGCCAAGACCACCATAAATTGTATGAGCTGGTTGTTCGCCACTTCTTGGCTTGTGTCTCAAAGCCTGCTGTAGGGGCTGAAACCACAGTTGAAATTGATATTGCTGGTGAACTTTTTCATGCATCTGGAAGGGTGGTTCTAGAGAGAAACTACTTGGATGTTTATCGCTATGAATCTTGGGGTGGAACAATGCTACCAACATATACTGTTGGTCAACAGTTCGTTCCAACAACATTGACCCTTGATTCAGGAGTAACCCGGCCACCCCCACTTCTTAGTGAAGCTGATCTTCTTACTTGTATGGACAAGGAGGGTATTGGTACAGATGCTACTATGCATGATCACATAAAAAAGTTGCTTGATCGATTTTATGCAACTAAGGATGCTAACACTCGTTTCACACCAACTAATCTTGGTGAAGCACTTGTTATGGGATATGATGACATGGGGTATAAACTTTGGAAACCATATCTTAGAGCAGCTATGGAACGTGATATGAAATCAGTCAGTGAAGGGACTAAAAGCAAATCTGAAGTTTTGGCAACTAGCTTGCAGCAGATGAAAGCTTGTTTCCTTGATGCCAGAGTGAATAAAGTGAAGCTTTTAGAGGCCATGGAGATATTTTTCCAGAGAACTAACAGGGCTGGTGGTGATGAGCTGCATGCAACAGGTGAAGTTGTTCGGCGATGTGGACTTTGCCAAGAATCAGATATGGTGCTAAGGAAAAATCGAGATGGCAATTTTATGGTTGGATGTCTGGGTTACCCTCAGGTTAGATCTCTTGATTTTTCAGTTCCTTTATTAGAAGCAGATGTTACTGCCAATGCTTGCAACACCTGCACCCCTGGTCCAGTTTACCTGATTAAATTCAAGTTTCGGCGGCTGGAAATACCACCAAACTACAGTGCGGAACATTTGGGTTGCATAGGTGGCTGTGATCAGATTCTTGCGGAGTTGACAGAAATATGTGGCACTGGCTCTCGCACAGGAAGAGCTCGTGGACCAGCTGCACAAACCAACAATGCCCGCCAAAGTAGCACAAGACAGGTTGTTTGTATGAACTGCCAAGAAACAGGACATTCTTCTAATGATTGTCCTTCACAAAGGAATGCCCGGCATCGTGGAACAAACCAACAAAACGGTGGGAGGATAGCCTCAACACTGGCACTGGAGGAAGAAATTTTACACGTTCGAGTAGTATTCCACAAGCCAACCGTGGGAGAAATGGTGGCCGTGGATCTCGTGGTAGAGGTAGACACAATGGATCTCATGCTGCTAACACGACTTTTGTGTCAGCCACTGGTGACCCTGTTAGTGGCAGAAGATGCTTTGTGTGTGGTGATCCATCTCACTTTGCTAATGTGTGCCCTAACCGTGGTGGCTAAAGCGTGTGCTCAATGA 2628 0.4589 MGARTVTVLNVAEKPSVARSVSTILSRNQGIRMREGRSRYNKIFEFSYSIRGQPCHMLFTSVTGHLMELEFDERFRKWHSCDPADLYHAPVRKSVPEDKKDIKRTLEEEARRCQWLVLWLDCDREGENIAFEVVDVCTMANQNLTIKRARFSALIDREIHQAVQNLVEPNKWFADAVDARQEIDLRIGASFTRFQTMLMKDAFIIDTASGDRNLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWTINCSHRSDEGLANFNWMRGHLFDYTCAVVIYEMCIEEPTATVTDVKQQEKLKYPPHPLNTIELEKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDSFSSRTDLHTIVQEQQAHPEWGTYAQRLLDPETGLWRNPRGGGHDDKAHPPIHPTKFSSGESNWSQDHHKLYELVVRHFLACVSKPAVGAETTVEIDIAGELFHASGRVVLERNYLDVYRYESWGGTMLPTYTVGQQFVPTTLTLDSGVTRPPPLLSEADLLTCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLGEALVMGYDDMGYKLWKPYLRAAMERDMKSVSEGTKSKSEVLATSLQQMKACFLDARVNKVKLLEAMEIFFQRTNRAGGDELHATGEVVRRCGLCQESDMVLRKNRDGNFMVGCLGYPQVRSLDFSVPLLEADVTANACNTCTPGPVYLIKFKFRRLEIPPNYSAEHLGCIGGCDQILAELTEICGTGSRTGRARGPAAQTNNARQSSTRQVVCMNCQETGHSSNDCPSQRNARHRGTNQQNGGRIASTLALEEEILHVRVVFHKPTVGEMVAVDLVVEVDTMDLMLLTRLLCQPLVTLLVAEDALCVVIHLTLLMCALTVVAKACAQ 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g02582 875 SMART topIban2 145 246 IPR003601 GO:0003677|GO:0003916|GO:0006265
Adu08g02582 875 SMART toprim5 7 142 IPR006171 -
Adu08g02582 875 Pfam Toprim domain 9 153 IPR006171 -
Adu08g02582 875 PANTHER DNA TOPOISOMERASE 3-ALPHA 7 699 - -
Adu08g02582 875 Gene3D Topoisomerase I, domain 2 176 600 IPR013824 -
Adu08g02582 875 SUPERFAMILY Retrovirus zinc finger-like domains 745 782 IPR036875 GO:0003676|GO:0008270
Adu08g02582 875 Gene3D Topoisomerase I, domain 3 240 498 IPR013825 -
Adu08g02582 875 SUPERFAMILY Prokaryotic type I DNA topoisomerase 8 598 IPR023405 -
Adu08g02582 875 ProSiteProfiles Toprim domain profile. 7 154 IPR006171 -
Adu08g02582 875 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 329 343 IPR023406 GO:0003917
Adu08g02582 875 SMART c2hcfinal6 760 776 IPR001878 GO:0003676|GO:0008270
Adu08g02582 875 SMART topIaneu2 292 552 IPR003602 GO:0003677|GO:0003916|GO:0006265
Adu08g02582 875 Gene3D - 750 787 - -
Adu08g02582 875 CDD TOPRIM_TopoIA_TopoIII 7 166 IPR034144 -
Adu08g02582 875 MobiDBLite consensus disorder prediction 768 791 - -
Adu08g02582 875 ProSiteProfiles Zinc finger CCHC-type profile. 761 776 IPR001878 GO:0003676|GO:0008270
Adu08g02582 875 Pfam DNA topoisomerase 170 589 IPR013497 GO:0003677|GO:0003916|GO:0006265
Adu08g02582 875 PRINTS Prokaryotic DNA topoisomerase I signature 116 129 IPR013497 GO:0003677|GO:0003916|GO:0006265
Adu08g02582 875 PRINTS Prokaryotic DNA topoisomerase I signature 416 432 IPR013497 GO:0003677|GO:0003916|GO:0006265
Adu08g02582 875 PRINTS Prokaryotic DNA topoisomerase I signature 334 343 IPR013497 GO:0003677|GO:0003916|GO:0006265
Adu08g02582 875 PRINTS Prokaryotic DNA topoisomerase I signature 514 528 IPR013497 GO:0003677|GO:0003916|GO:0006265
Adu08g02582 875 PRINTS Prokaryotic DNA topoisomerase I signature 216 234 IPR013497 GO:0003677|GO:0003916|GO:0006265
Adu08g02582 875 CDD TOP1Ac 173 600 IPR013497 GO:0003677|GO:0003916|GO:0006265
Adu08g02582 875 Gene3D Topoisomerase I, domain 4 300 430 IPR013826 -
Adu08g02582 875 Pfam Zinc knuckle 760 776 IPR001878 GO:0003676|GO:0008270
Adu08g02582 875 PANTHER PROKARYOTIC DNA TOPOISOMERASE 7 699 IPR000380 GO:0003677|GO:0003917|GO:0006265
Adu08g02582 875 Gene3D - 2 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g02582 Adu-Chr8 41908244 41925183 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g02582 K03165 - jre:109018851 1339.71