Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g2756 ATGGTCACAACTCACAAGTGTCAATTGAATTTGAAAATCGTCCACCTCACCATCTCGCCGCTCTCAAACATTATTTCCTCGCGGGAAAGCTCTATAGCCTATACAGTATACCCCATTCCAGTATTCCACTGTTACAACCCTCAACACATTCATTTTCCTCACCGCCAAAACCCCAACTGCTCCTCCACGCGCCGAAAAATGGGCGCGCGCACCGTCACGGTGCTGAACGTGGCGGAGAAGCCGTCGGTGGCGCGGTCCGTCTCCACCATCTTGTCACGGAATCAGGGCATTCGAATGAGGGAAGGTCGGTCCCGCTACAACAAGATCTTCGAGTTTTCTTACTCCATTCGCGGCCAACCCTGCCACATGCTCTTCACCTCCGTCACCGGCCACCTCATGGAGCTCGAGTTCGACGAACGCTTTCGCAAGTGGCACTCCTGCGACCCCGCCGATCTCTACCACGCTCCTGTCCGAAAATTCGTTCCTGAGGACAAGAAGGATATCAAGAGGACGCTGGAGGAGGAAGCCAGGAGGTGTCAGTGGCTTGTTCTGTGGCTTGACTGTGATAGAGAGGGTGAAAACATTGCATTTGAGGTGGTTGATGTTTGCACCATGGCAAACCAGAATCTTACTATAAAGAGGGCTCGATTTTCTGCGTTGATTGATAGGGAAATTCATCAGGCAGTACAGAATCTGGTTGAGCCAAATAAGTGGTTTGCAGATGCTGTGGATGCTAGGCAAGAAATTGATCTTCGTATTGGTGCTTCTTTCACCAGATTCCAGACCATGTTAATGAAAGATGCTTTTATAATTGACACTGCTTCTGGTGACAGAAATCTTGTCTTAAGTTATGGCCCTTGCCAGTTTCCTACACTTGGATTTGTTGTAGAAAGATATTGGGAGATACAAGCACATGAGCCAGAAGAGTTTTGGACAATCAATTGTTCTCATAGATCAGAAGAAGGTCTTGCTAATTTCAACTGGATGCGGGGTCATTTGTTTGATTATACTTGTGCAGTAGTAATATACGAGATGTGCATTGAGGAACCAACTGCAACTGTCACAGATGTTAAACAACAAGAGAAATTGAAGTATCCTCCTCATCCTCTGAATACCATTGAGCTTGAGAAACGTGCTTCACGATATTTTCGAATGAGTTCTGAGCACACGATGAAGGTGGCAGAAGAGCTTTACCAAGCTGGTTTCATCAGTTATCCTCGTACAGAAACTGATAGTTTTTCTTCAAGGACTGATTTGCATACAATTGTGCAAGAACAACAAGCGCATCCTGAATGGGGAACATATGCACAACGGTTGTTGGACCCTGAGACAGGACTTTGGAGAAATCCTCGTGGTGGTGGACATGATGACAAGGCCCATCCTCCCATTCACCCTACAAAGTTTTCTAGTGGAGAATCCAATTGGAGCCAAGACCACCATAAATTGTATGAGCTGGTTGTTCGCCACTTCTTGGCTTGTGTCTCAAAGCCTGCTGTAGGGGCTGAAACCACAGTTGAAATTGATATTGCTGGTGAACTTTTTCATGCATCTGGAAGGGTGGTTCTAGAGAGAAACTACTTGGATGTTTATCGCTATGAATCTTGGGGTGGAACAATGCTACCAACATATACTGTTGGTCAACAGTTCGTTCCAACAACATTGACCCTTGATTCAGGAGTAACCCGGCCACCACCACTTCTTAGTGAAGCTGATCTTCTTACTTGTATGGACAAGGAGGGTATTGGTACAGATGCTACTATGCATGATCACATAAAAAAGTTGCTTGATCGATTTTATGCAACTAAGGATGCTAACACTCGTTTCACACCAACTAATCTTGGTGAAGCACTTGTTATGGGATATGATGACATGGGGTATAAACTTTGGAAACCATATCTTAGAGCAGCTATGGAACGTGATATGAAATCAGTCAGTGAAGGGACTAAAAGCAAATCTGAAGTTTTGGCAATTAGCTTGCAGCAGATGAAAGCTTGTTTCCTTGATGCCAGAGTGAATAAACTGAAGCTTTTAGAGGCCATGGAGATATTTTTCCAGAGAACTAACAGGGCTGGTGGTGATGAGCTGCATGCAACAGGTGAAGTTGTTCGGCAATGTGGACTTTGCCAAGAATCAGATATGGTGCTAAGGAAAAATCGAGATGGCAATTTTATGGTTGGATGTCTGGGTTACCCTCAGTGCAGGAATGCTGTCTGGCTTCCTGGACCAGTATTAGAAGCAGATGTTACTGCCAATGCTTGCAACACCTGCACCCCTGGTCCAGTTTACCTGATTAAATTCAAGTTTCGGCGGCTGGAAATACCACCAAACTACAGTGCGGACCATTTGGGTTGCATAGGTGGCTGTGATCAGATTCTTGCGGAGTTGACAGAAATATGTGGCACTGGCTCTCGCACAGGAAGAGCTCGTGGACCAGCTGCACAAACCAACAATGCCCGTCAAAGTAACACAAGACAGGTTGTTTGTATGAACTGCCAAGAAACAGGACATTCTTCTAATGATTGTCCTTCACAAAGGAATGCCCGGCATCGTGGAACAAACCAACAAAATGGGGAAGCCACTGTTTCATGCAGTTCCTGTGGGATGCCATGTGTTTTGAGAACTGCAAATACAGAAAATAACAGGGGAAGAAAGTTCTACAAATGTCAATCACAGGAGTGTAACTTTTTTGCGTGGGAGGATAGCCTCAACACTGGCACTGGAGGAAGAAATTTTACACGTTCAAGTAGTATTCCACAAGCCAACCGTGGGAGAAATGGTGGCCGTGGATCTCGCGGTAGAGGTAGACACAATGGATCTCATGCTGCTAACACGACTTTTGTGTCAGCCACTGGTGACCCTGTTAGTGGCAGAAGATGCTTTGTGTGTGGTGATCCATCTCACTTTGCTAATGTGTGCCCTATCCGTGGTGGCTAA 2934 0.4577 MVTTHKCQLNLKIVHLTISPLSNIISSRESSIAYTVYPIPVFHCYNPQHIHFPHRQNPNCSSTRRKMGARTVTVLNVAEKPSVARSVSTILSRNQGIRMREGRSRYNKIFEFSYSIRGQPCHMLFTSVTGHLMELEFDERFRKWHSCDPADLYHAPVRKFVPEDKKDIKRTLEEEARRCQWLVLWLDCDREGENIAFEVVDVCTMANQNLTIKRARFSALIDREIHQAVQNLVEPNKWFADAVDARQEIDLRIGASFTRFQTMLMKDAFIIDTASGDRNLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWTINCSHRSEEGLANFNWMRGHLFDYTCAVVIYEMCIEEPTATVTDVKQQEKLKYPPHPLNTIELEKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDSFSSRTDLHTIVQEQQAHPEWGTYAQRLLDPETGLWRNPRGGGHDDKAHPPIHPTKFSSGESNWSQDHHKLYELVVRHFLACVSKPAVGAETTVEIDIAGELFHASGRVVLERNYLDVYRYESWGGTMLPTYTVGQQFVPTTLTLDSGVTRPPPLLSEADLLTCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLGEALVMGYDDMGYKLWKPYLRAAMERDMKSVSEGTKSKSEVLAISLQQMKACFLDARVNKLKLLEAMEIFFQRTNRAGGDELHATGEVVRQCGLCQESDMVLRKNRDGNFMVGCLGYPQCRNAVWLPGPVLEADVTANACNTCTPGPVYLIKFKFRRLEIPPNYSADHLGCIGGCDQILAELTEICGTGSRTGRARGPAAQTNNARQSNTRQVVCMNCQETGHSSNDCPSQRNARHRGTNQQNGEATVSCSSCGMPCVLRTANTENNRGRKFYKCQSQECNFFAWEDSLNTGTGGRNFTRSSSIPQANRGRNGGRGSRGRGRHNGSHAANTTFVSATGDPVSGRRCFVCGDPSHFANVCPIRGG* 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g2756 977 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 395 409 IPR023406 GO:0003917
Ahy18g2756 977 MobiDBLite consensus disorder prediction 835 860 - -
Ahy18g2756 977 Pfam DNA topoisomerase 236 655 IPR013497 GO:0003677|GO:0003916|GO:0006265
Ahy18g2756 977 CDD TOPRIM_TopoIA_TopoIII 73 232 IPR034144 -
Ahy18g2756 977 Pfam Topoisomerase DNA binding C4 zinc finger 703 740 IPR013498 GO:0003677|GO:0003916|GO:0005694|GO:0006265
Ahy18g2756 977 Gene3D - 61 235 - -
Ahy18g2756 977 MobiDBLite consensus disorder prediction 907 923 - -
Ahy18g2756 977 SMART c2hcfinal6 827 843 IPR001878 GO:0003676|GO:0008270
Ahy18g2756 977 SMART c2hcfinal6 958 974 IPR001878 GO:0003676|GO:0008270
Ahy18g2756 977 PRINTS Prokaryotic DNA topoisomerase I signature 182 195 IPR013497 GO:0003677|GO:0003916|GO:0006265
Ahy18g2756 977 PRINTS Prokaryotic DNA topoisomerase I signature 400 409 IPR013497 GO:0003677|GO:0003916|GO:0006265
Ahy18g2756 977 PRINTS Prokaryotic DNA topoisomerase I signature 282 300 IPR013497 GO:0003677|GO:0003916|GO:0006265
Ahy18g2756 977 PRINTS Prokaryotic DNA topoisomerase I signature 580 594 IPR013497 GO:0003677|GO:0003916|GO:0006265
Ahy18g2756 977 PRINTS Prokaryotic DNA topoisomerase I signature 482 498 IPR013497 GO:0003677|GO:0003916|GO:0006265
Ahy18g2756 977 ProSiteProfiles Toprim domain profile. 73 220 IPR006171 -
Ahy18g2756 977 CDD TOP1Ac 239 666 IPR013497 GO:0003677|GO:0003916|GO:0006265
Ahy18g2756 977 Pfam GRF zinc finger 862 901 IPR010666 GO:0008270
Ahy18g2756 977 Gene3D - 817 854 - -
Ahy18g2756 977 PANTHER PROKARYOTIC DNA TOPOISOMERASE 73 766 IPR000380 GO:0003677|GO:0003917|GO:0006265
Ahy18g2756 977 SMART topIaneu2 358 618 IPR003602 GO:0003677|GO:0003916|GO:0006265
Ahy18g2756 977 SUPERFAMILY Retrovirus zinc finger-like domains 811 849 IPR036875 GO:0003676|GO:0008270
Ahy18g2756 977 Pfam Toprim domain 75 219 IPR006171 -
Ahy18g2756 977 ProSiteProfiles Zinc finger CCHC-type profile. 957 973 IPR001878 GO:0003676|GO:0008270
Ahy18g2756 977 SUPERFAMILY Prokaryotic type I DNA topoisomerase 74 662 IPR023405 -
Ahy18g2756 977 PANTHER DNA TOPOISOMERASE 3-ALPHA 73 766 - -
Ahy18g2756 977 Gene3D Topoisomerase I, domain 4 366 496 IPR013826 -
Ahy18g2756 977 Pfam Zinc knuckle 827 843 IPR001878 GO:0003676|GO:0008270
Ahy18g2756 977 SMART toprim5 73 208 IPR006171 -
Ahy18g2756 977 SMART topIban2 211 312 IPR003601 GO:0003677|GO:0003916|GO:0006265
Ahy18g2756 977 Gene3D Topoisomerase I, domain 2 242 666 IPR013824 -
Ahy18g2756 977 ProSiteProfiles Zinc finger CCHC-type profile. 828 843 IPR001878 GO:0003676|GO:0008270
Ahy18g2756 977 Gene3D Topoisomerase I, domain 3 306 564 IPR013825 -
Ahy18g2756 977 MobiDBLite consensus disorder prediction 907 949 - -
Ahy18g2756 977 Gene3D Bacterial Topoisomerase I, domain 1 694 739 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g2756 Ahy-Chr18 131212808 131230020 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g2756 K03165 - jre:109018851 1528.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g2756 18 131212808 131230020 Ahy8g2493 8 47717643 47736652 hybridization