Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu9g1608 . . Adu10g01817 . Aev08g0568 Ahy20g2042 Ahy10g1600 . . Amo10g2146 . . Arst10g02316 . . . . . . Dod09g1842 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Spst9g01866 . . . . . . . Vimu10g01839 . . .
Pvu9g1609 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Spst9g01864 . . . . . . . Vimu10g01841 . . .
Pvu9g1610 . . . . . . . Aip10g02399 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Spst9g01863 . . . . . . . . . . .
Pvu9g1611 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu9g1612 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu9g1613 . . . . . . . . . . Amo20g2632 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu9g1614 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu9g1615 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Spst9g01858 . . . . . . . Vimu10g01845 . . .
Pvu9g1616 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Spst9g01856 . . . . . . . Vimu10g01846 . . Vra5g0583
Pvu9g1617 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Spst9g01854 . . . . . . . Vimu10g01847 . . .
   
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Select Species Gene Chromosome Start End Strand
Ahy Ahy10g1600 Chr10 92654288 92658952 +
Arst Arst10g02316 Chr10 82167871 82172377 +
Pvu Pvu9g1608 Chr9 22632704 22638395 -
Adu Adu10g01817 Chr10 83250953 83254156 +
Aev Aev08g0568 Chr08 3277441 3280834 -
Ahy Ahy20g2042 Chr20 115528016 115532624 +
Ahy Ahy10g1600 Chr10 92654288 92658952 +
Amo Amo10g2146 Chr10 75829475 75834141 +
Arst Arst10g02316 Chr10 82167871 82172377 +
Dod Dod09g1842 Chr09 39991424 39992803 +
Spst Spst9g01866 Chr9 24345444 24349794 +
Vimu Vimu10g01839 Chr10 26168263 26172512 -
Pvu Pvu9g1609 Chr9 22649304 22651245 -
Spst Spst9g01864 Chr9 24314516 24316935 +
Vimu Vimu10g01841 Chr10 26206407 26210886 -
Pvu Pvu9g1610 Chr9 22658730 22660081 -
Aip Aip10g02399 Chr10 108169415 108170548 +
Spst Spst9g01863 Chr9 24311859 24312617 +
Pvu Pvu9g1611 Chr9 22661863 22663611 -
Pvu Pvu9g1612 Chr9 22663658 22668927 +
Pvu Pvu9g1613 Chr9 22666822 22668756 -
Amo Amo20g2632 Chr20 122183396 122185425 +
Pvu Pvu9g1614 Chr9 22671706 22673329 +
Pvu Pvu9g1615 Chr9 22688263 22689370 +
Spst Spst9g01858 Chr9 24280126 24280990 -
Vimu Vimu10g01845 Chr10 26261151 26262125 +
Pvu Pvu9g1616 Chr9 22695635 22703454 +
Spst Spst9g01856 Chr9 24143383 24147655 -
Vimu Vimu10g01846 Chr10 26309525 26316663 +
Vra Vra5g0583 Chr5 7628814 7635036 -
Pvu Pvu9g1617 Chr9 22729115 22732080 +
Spst Spst9g01854 Chr9 24105124 24108282 -
Vimu Vimu10g01847 Chr10 26323808 26326798 +