Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1605 ATGGGAAATTCAGAGTCAATGTATGAATCTGAGGATAATTTTTATCAACATCCCCCTTATTATGGTGGGAGTTCAGTGAATGATAGCTATCATCAGCCGTCCTCTTACACTGGGAATTTGGAGAATACTACCTATGAGGAATCATATTATGCTTGGGATTATTCGAATACTACCTATAATCAACCCTCTACTTATACTGGGAGCTCAGCAAACACTCGGAGTCAGAAAAAGCAGCAACCCACATATATAGCTGATAATTTCAGCTCATTGGATCAGGTTGTTTCTGCTCTTAGAGAAGCTGGTCTGGAATCTTCAAATTTAATAGTTGCTATTGACTTCACCAAAAGCAATGAATGGACAGGCAAGCACTCGTTCCATCGAAAAAGCCTTCATCATATCGGAAACAGTCCTAATCCATATGAGCAAGCTATCTCCATCATTGGTCATACTTTGTCTTCCTTTGATGAAGACAATCTGATACCCTGTTTTGGATTTGGTGATGCTTCTACACATGATCAGAATGTGTTCAGTTTTTATCAAGATAATAGATTTTGTCATGGTTTTGAGGAAGTACTTGAACGCTACAGAGAGATTGTTCCATGCTTAAAGCTATCAGGTCCAACATCATTTGCCCCTGTAATCGATGCAGCAATTGACATCGTAGAGAGGAACAACGGTCAATATCATGTTCTTGTCATTATTGCTGATGGACAGGTTACCAGAAATCCAGATACACCACATGGAAGGCTTAGTCCTCAAGAACAAGCAACCATTAATTCCATCGTTGGTGCAAGTTACTATCCTCTCTCGATTATTTTGGTTGGCGTTGGAGATGGACCATGGGATGAGATGAAGCACTTTGATGATAACATTACTGAGCGAGTATTTGACAACTTTCAGTTTGTGAACTTCACAAAAATCATGTCCGAGAACACAGAAGCATCAAAGAAGGAAGCAGCATTTGCACTTGCTGCCCTTATGGAAATTCCATTTCAGTACCGGGCAGCTCAAAATATACAACTTTCTGAAGAATCAGTTCTTCAGCAATGGAGAAGGCCTCTCCCTCCGCCTAATGAAGTAATAGATAATGATAATGCACGCATGACTATTCCGCACATGGCAAATTTGGAATCAGTTGAACCATCGGCTCCAGCTGGTATTGAACCAGTATGCCCCATTTGTCTTACCAACCCTAAGGACATGGCTTTTGGATGTGGTCACACAACTTGCAAGGAGTGTGGCTCGACATTATCTTCGTGCCCAATGTGCCGGAAGCAAATTACAACTCGCCTGAGATTGTACACTTGA 1308 0.4121 MGNSESMYESEDNFYQHPPYYGGSSVNDSYHQPSSYTGNLENTTYEESYYAWDYSNTTYNQPSTYTGSSANTRSQKKQQPTYIADNFSSLDQVVSALREAGLESSNLIVAIDFTKSNEWTGKHSFHRKSLHHIGNSPNPYEQAISIIGHTLSSFDEDNLIPCFGFGDASTHDQNVFSFYQDNRFCHGFEEVLERYREIVPCLKLSGPTSFAPVIDAAIDIVERNNGQYHVLVIIADGQVTRNPDTPHGRLSPQEQATINSIVGASYYPLSIILVGVGDGPWDEMKHFDDNITERVFDNFQFVNFTKIMSENTEASKKEAAFALAALMEIPFQYRAAQNIQLSEESVLQQWRRPLPPPNEVIDNDNARMTIPHMANLESVEPSAPAGIEPVCPICLTNPKDMAFGCGHTTCKECGSTLSSCPMCRKQITTRLRLYT* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1605 435 CDD RING-HC_RGLG_plant 390 434 IPR045317 GO:0061630|GO:0070534
Pvu9g1605 435 ProSiteProfiles Zinc finger RING-type profile. 391 424 IPR001841 -
Pvu9g1605 435 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RGLG3 67 434 - -
Pvu9g1605 435 SMART ring_2 391 423 IPR001841 -
Pvu9g1605 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 383 435 IPR013083 -
Pvu9g1605 435 SUPERFAMILY RING/U-box 390 430 - -
Pvu9g1605 435 PANTHER COPINE FAMILY PROTEIN 1 67 434 - -
Pvu9g1605 435 SUPERFAMILY vWA-like 105 288 IPR036465 -
Pvu9g1605 435 MobiDBLite consensus disorder prediction 1 21 - -
Pvu9g1605 435 CDD vWA_copine_like 83 333 IPR010734 -
Pvu9g1605 435 SMART VWA_4 104 307 IPR002035 -
Pvu9g1605 435 Pfam Copine 129 340 IPR010734 -
Pvu9g1605 435 Pfam Zinc finger, C3HC4 type (RING finger) 390 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1605 Pvu-Chr9 22568381 22575241 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1605 K16280 - gmx:100776002 752.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1605 9 22568381 22575241 Pvu9g1605 9 22568381 22575241 ECH