Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1600 ATGAACGTTCTGAACGTGGCGGAGAAGCCCTCTGTGGCGAAGTCCGTCTCCACCATCCTCTCCCGGAACCAGGGCATAAGAACGAGGGAGGGTCGTTCCCGCTACAACAAGATCTTCGAGTTCAACTACACCATTCGCGGCCAACCCTGCCACATGCTCTTCACCTCTGTCACCGGCCACCTTATGGAGCTCGAGTTCGACGAGCGTTACCGCAAGTGGCACGCGTGTAACCCCGCCGATCTCTTCCGCGCCCCTGTCCACAAATTCGTCCCCGAGGACAAAAAAGATATCAAGAGGACGCTGGAGGAGGAAGCGAGGAGGTGCCAGTGGCTTGTTTTGTGGCTCGATTGCGATAGAGAGGGTGAGAACATTGCGTTTGAAGTGGTTGACGTCTGTACTGCGGTGAATCCTCATCTTACTATAAAACGGGCTCGGTTTTCTGCATTGATTGACAGAGAGATCCATCATGCTGTTCAGAATCTTGAGGAGCCGAAGAAATGTCTTGCTGATGCTGTCGATGCCAGGCAGGAAATAGATCTCCGTATAGGTGCTTCTTTCACGAGGTTCCAGACCATGTTGATGAAAGATGCTTTTGTCATTGACACTGCTACAGATGGCAGAAACCTTATCCTAAGTTACGGCCCTTGCCAGTTTCCTACACTTGGATTTGTCGTGGAACGGTATTGGGAGATACAAGCACATGAGCCAGAAGAGTTTTGGTCTATCAACTGCGCTCATGAATCAGAGGGACGCATTGCTAAGTTCGGCTGGATGCGGGGCCACTTGTTTGATTATACATGTGCAGTTATAATATATGAGATGTGTGTTGAGGAGCCAACAGCAACAGTGACAAACGTAAGACATCAGGAAAAGCCAAAGTATCCTCCACATCCTTTGAATACCATTGAGCTTGAAAAGCGTGCTTCAAGATACTTCAGGATGAGTTCTGAGCACACAATGAAGGTGGCAGAAGAACTTTACCAAGCTGGTTTCATCAGTTATCCCCGTACAGAGACTGATAACTTTTCTTCAAGGACTGATTTGCATACAATTGTGCAAGAACAACAAGGGCATCCTGAGTGGGGAGTATATGCACAACGATTGTTGGACCCTGGGACAGGGCTTTGGAGAAACCCTAGAGGTGGTGGACACGATGACAAGGCTCATCCACCCATTCACCCTACAAAATTTTCTACTGGAGAATCTGGATGGAGCCAAGATCACCGTAAACTGTACGAGCTGGTTGTTCGCCACTTTTTGGCATGTGTCTCAAAGCCTGCTATAGGAGCTGAAACTACTGTTGAAATTGATATTGCCGGTGAACTATTTTCTGCTTGTGGGAGGGTGATTCTAGAGAAAAACTACTTGGATGTTTATCACTACGAATCTTGGGGTGGATCACTGATTCCAACATATACTATTGGTCAACAGTTCATTCCAACAACATTAATCCTTGATTCCGGAGTAACCCGACCACCACCACTTTTAAGTGAAGCTGATTTGCTGAGTTATATGGACAAGGAGGGTATTGGTACAGATGCTACGATGCATGATCACATCAAGAAGCTACTTGATCGATTTTATGCAACTAAGGATGCTAACACTCGTTTCACACCAACTAATCTTGGTGAGGCACTTGTTATGGGATATGATGACATGGGGTATAAACTCTGGAAACCTTATCTTAGAGCAGTTATGGAACGTGACATGAAATTTGTTAGTGAAGGAAATAAAAGCAAAGCTGATGTTTTGGCAACTAGCTTGCAGCTGATGGAAGCTTGTTTCCTAGATGCGAGATTGAATAAAGTGAAACTTTTAGAAGCCATGGCAATATTTTTTGAAAGATCCGGTAGATCTGGCAATGACGAGCTACATGCAATGGGAGAAGTTGTTCGACAATGTGGACTTTGTCAAGAATCAGACATGGTGCTAAGGAAAAATCGAGATGGCAATTTTATGGTTGGATGTTTGGGCTACCCTCAGTTACAACTCATCTACCCTTGGAAATACCAGTTACCAATATTATTGTGCTCTCGGGGACAAAAGAAAGAGTTGAAAGAAATAGATGAAATGTATTTCTGA 2082 0.4534 MNVLNVAEKPSVAKSVSTILSRNQGIRTREGRSRYNKIFEFNYTIRGQPCHMLFTSVTGHLMELEFDERYRKWHACNPADLFRAPVHKFVPEDKKDIKRTLEEEARRCQWLVLWLDCDREGENIAFEVVDVCTAVNPHLTIKRARFSALIDREIHHAVQNLEEPKKCLADAVDARQEIDLRIGASFTRFQTMLMKDAFVIDTATDGRNLILSYGPCQFPTLGFVVERYWEIQAHEPEEFWSINCAHESEGRIAKFGWMRGHLFDYTCAVIIYEMCVEEPTATVTNVRHQEKPKYPPHPLNTIELEKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDNFSSRTDLHTIVQEQQGHPEWGVYAQRLLDPGTGLWRNPRGGGHDDKAHPPIHPTKFSTGESGWSQDHRKLYELVVRHFLACVSKPAIGAETTVEIDIAGELFSACGRVILEKNYLDVYHYESWGGSLIPTYTIGQQFIPTTLILDSGVTRPPPLLSEADLLSYMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLGEALVMGYDDMGYKLWKPYLRAVMERDMKFVSEGNKSKADVLATSLQLMEACFLDARLNKVKLLEAMAIFFERSGRSGNDELHAMGEVVRQCGLCQESDMVLRKNRDGNFMVGCLGYPQLQLIYPWKYQLPILLCSRGQKKELKEIDEMYF* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1600 693 ProSiteProfiles Toprim domain profile. 2 147 IPR006171 -
Pvu9g1600 693 Gene3D Topoisomerase I, domain 3 235 493 IPR013825 -
Pvu9g1600 693 CDD TOP1Ac 168 595 IPR013497 GO:0003677|GO:0003916|GO:0006265
Pvu9g1600 693 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 324 338 IPR023406 GO:0003917
Pvu9g1600 693 PANTHER PROKARYOTIC DNA TOPOISOMERASE 1 656 IPR000380 GO:0003677|GO:0003917|GO:0006265
Pvu9g1600 693 SUPERFAMILY Prokaryotic type I DNA topoisomerase 3 592 IPR023405 -
Pvu9g1600 693 Pfam DNA topoisomerase 166 584 IPR013497 GO:0003677|GO:0003916|GO:0006265
Pvu9g1600 693 Gene3D - 1 164 - -
Pvu9g1600 693 Gene3D Topoisomerase I, domain 2 171 595 IPR013824 -
Pvu9g1600 693 SMART toprim5 2 137 IPR006171 -
Pvu9g1600 693 PANTHER DNA TOPOISOMERASE 3-ALPHA 1 656 - -
Pvu9g1600 693 PRINTS Prokaryotic DNA topoisomerase I signature 111 124 IPR013497 GO:0003677|GO:0003916|GO:0006265
Pvu9g1600 693 PRINTS Prokaryotic DNA topoisomerase I signature 211 229 IPR013497 GO:0003677|GO:0003916|GO:0006265
Pvu9g1600 693 PRINTS Prokaryotic DNA topoisomerase I signature 329 338 IPR013497 GO:0003677|GO:0003916|GO:0006265
Pvu9g1600 693 PRINTS Prokaryotic DNA topoisomerase I signature 411 427 IPR013497 GO:0003677|GO:0003916|GO:0006265
Pvu9g1600 693 PRINTS Prokaryotic DNA topoisomerase I signature 509 523 IPR013497 GO:0003677|GO:0003916|GO:0006265
Pvu9g1600 693 SMART topIaneu2 287 547 IPR003602 GO:0003677|GO:0003916|GO:0006265
Pvu9g1600 693 Pfam Toprim domain 4 148 IPR006171 -
Pvu9g1600 693 CDD TOPRIM_TopoIA_TopoIII 2 161 IPR034144 -
Pvu9g1600 693 Gene3D Topoisomerase I, domain 4 295 425 IPR013826 -
Pvu9g1600 693 SMART topIban2 140 241 IPR003601 GO:0003677|GO:0003916|GO:0006265
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1600 Pvu-Chr9 22473148 22484533 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1600 K03165 - gmx:100818971 1176.77