Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g03564 ATGGGCGCGCGCACCGTCACGGTGCTGAACGTGGCGGAGAAGCCGTCGGTGGCGCGGTCCGTCTCCACCATCTTGTCACGGAATCAGGGCATTCGAATGAGGGAAGGTCGCTCCCGCTACAACAAGATCTTCGAGTTTTCTTACTCCATTCGCGGCCAACCCTGCCACATGCTCTTCACCTCCGTCACCGGCCACCTCATGGAGCTCGAGTTCGACGAACGCTTTCGCAAGTGGCACTCCTGTGACCCCGCCGATCTCTACCACGCTCCTGTCCGAAAATCCGTTCCTGAGGACAAGAAGGATATCAAGAGGACGCTGGAGGAGGAAGCCAGGAGGTGTCAGTGGCTTGTTCTGTGGCTTGATTGTGATAGAGAGGGTGAAAACATTGCATTTGAGGTGGTTGATGTTTGCACCATGGCAAACCAGAATCTTACTATAAAGAGGGCTCGATTTTCTGCGTTGATTGATAGGGAAATTCATCAGGCAGTACAGAATCTGGTTGAGCCAAATAAGTGGTTTGCAGATGCTGTGGATGCTAGGCAAGAAATTGATCTTCGTATTGGTGCTTCTTTCACCAGATTCCAGACCATGTTAATGAAAGATGCTTTTATAATTGACACTGCTTCTGGTGACAGAAATCTTGTCTTAAGTTATGGCCCCTGCCAGTTTCCTACACTTGGATTTGTTGTAGAAAGATATTGGGAGATACAAGCACATGAGCCAGAAGAGTTTTGGACAATCAATTGTTCGCATAGATCAGATGAAGGTCTTGCTAATTTCAACTGGATGCGGGGTCATTTGTTTGATTATACTTGTGCAGTAGTAATATACGAGATGTGCATTGAGGAACCAACTGCAACTGTCACAGATGTTAAACAACAAGAGAAATTGAAGTATCCTCCTCATCCTCTGAATACCATTGAGCTTGAGAAACGTGCTTCACGATATTTTCGAATGAGTTCTGAGCACACGATGAAGGTGGCAGAAGAGCTTTACCAAGCTGGTTTCATCAGTTATCCTCGTACAGAAACTGATAGTTTTTCTTCAAGGACTGATTTGCATACAATTGTGCAAGAACAACAAGCGCATCCTGAATGGGGAACATATGCACAACGGTTGTTGGACCCTGAGACAGGACTTTGGAGAAATCCTCGTGGTGGTGGACATGATGACAAGGCCCATCCTCCCATTCACCCTACAAAGTTTTCTAGTGGAGAATCCAATTGGAGCCAAGACCACCATAAATTGTATGAGCTGGTTGTTCGCCACTTCTTGGCTTGTGTCTCAAAGCCTGCTGTAGGGGCTGAAACCACAGTTGAAATTGATATTGCTGGTGAACTTTTTCATGCATCTGGAAGGGTGGTTCTAGAGAGAAACTACTTGGATGTTTATCGCTATGAATCTTGGGGTGGAACAATGCTACCAACATATACTGTTGGTCAACAGTTCGTTCCAACAACATTGACCCTTGATTCAGGAGTAACCCGGCCACCCCCACTTCTTAGTGAAGCTGATCTTCTTACTTGTATGGACAAGGAGGGTATTGGTACAGATGCTACTATGCATGATCACATAAAAAAGTTGCTTGATCGATTTTATGCAACTAAGGATGCTAACACTCGTTTCACACCAACTAATCTTGGTGAAGCACTTGTTATGGGATATGATGACATGGGGTATAAACTTTGGAAACCATATCTTAGAGCAGCTATGGAACGTGATATGAAATCAGTCAGTGAAGGGACTAAAAGCAAATCTGAAGTTTTGGCAACTAGCTTGCAGCAGATGAAAGCTTGTTTCCTTGATGCCAGAGTGAATAAAGTGAAGCTTTTAGAGGCCATGGAGATATTTTTCCAGAGAACTAACAGGGCTGGTGGTGATGAGCTGCATGCAACAGGTGAAGTTGTTCGGCGATGTGGACTTTGCCAAGAATCAGATATGGTGCTAAGGAAAAATCGAGATGGCAATTTTATGGTTGGATGTCTGGGTTACCCTCAGGTTAGATCTCTTGATTTTTCAGTTCCTTGTTATAATNNNCTCCCTGGACCAGTATTAGAAGCAGATGTTACTGCCAATGCTTGCAACACCTGCACCCCTGGTCCAGTTTACCTGATTAAATTCAAGTTTCGGCGGCTGGAAATACCACCAAACTACAGTGCGGAACATTTGGGTTGCATAGGTGGCTGTGATCAGATTCTTGCGGAGTTGACAGAAATATGTGGCACTGGCTCTCGCACAGGAAGAGCTCGTGGACCAGCTGCACAAACCAACAATGCCCGCCAAAGTAGCACAAGACAGGTTGTTTGTATGAACTGCCAAGAAACAGGACATTCTTCTAATGATTGTCCTTCACAAAGGAATGCCCGGCATCGTGGAACAAACCAACAAAACGGGGAAGCCACTGTTTCATGCAGTTCCTGTGGGATGCCATGTGTTTTGAGAACTGCAAATACCGAAAATAACAGGGGAAGAAAGTTCTACAAATGTCAATCACAGGACTGTAACTTTTTTGCGTGGGAGGATAGCCTCAACACTGGCACTGGAGGAAGAAATTTTACACGTTCGAGTAGTATTCCACAAGCCAACCGTGGGAGAAATGGTGGCCGTGGATCTCGTGGTAGAGGTAGACACAATGGATCTCATGCTGCTAACACGACTTTTGTGTCAGCCACTGGTGACCCTGTTAGTGGCAGAAGATGCTTTGTGTGTGGTGATCCATCTCACTTTGCTAATGTGTGCCCTAACCGTGGTGGCTAA 2757 0.4567 MGARTVTVLNVAEKPSVARSVSTILSRNQGIRMREGRSRYNKIFEFSYSIRGQPCHMLFTSVTGHLMELEFDERFRKWHSCDPADLYHAPVRKSVPEDKKDIKRTLEEEARRCQWLVLWLDCDREGENIAFEVVDVCTMANQNLTIKRARFSALIDREIHQAVQNLVEPNKWFADAVDARQEIDLRIGASFTRFQTMLMKDAFIIDTASGDRNLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWTINCSHRSDEGLANFNWMRGHLFDYTCAVVIYEMCIEEPTATVTDVKQQEKLKYPPHPLNTIELEKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDSFSSRTDLHTIVQEQQAHPEWGTYAQRLLDPETGLWRNPRGGGHDDKAHPPIHPTKFSSGESNWSQDHHKLYELVVRHFLACVSKPAVGAETTVEIDIAGELFHASGRVVLERNYLDVYRYESWGGTMLPTYTVGQQFVPTTLTLDSGVTRPPPLLSEADLLTCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLGEALVMGYDDMGYKLWKPYLRAAMERDMKSVSEGTKSKSEVLATSLQQMKACFLDARVNKVKLLEAMEIFFQRTNRAGGDELHATGEVVRRCGLCQESDMVLRKNRDGNFMVGCLGYPQVRSLDFSVPCYNXLPGPVLEADVTANACNTCTPGPVYLIKFKFRRLEIPPNYSAEHLGCIGGCDQILAELTEICGTGSRTGRARGPAAQTNNARQSSTRQVVCMNCQETGHSSNDCPSQRNARHRGTNQQNGEATVSCSSCGMPCVLRTANTENNRGRKFYKCQSQDCNFFAWEDSLNTGTGGRNFTRSSSIPQANRGRNGGRGSRGRGRHNGSHAANTTFVSATGDPVSGRRCFVCGDPSHFANVCPNRGG 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g03564 918 SMART toprim5 7 142 IPR006171 -
Arst8g03564 918 ProSiteProfiles Zinc finger CCHC-type profile. 898 915 IPR001878 GO:0003676|GO:0008270
Arst8g03564 918 MobiDBLite consensus disorder prediction 845 864 - -
Arst8g03564 918 Pfam GRF zinc finger 803 842 IPR010666 GO:0008270
Arst8g03564 918 ProSiteProfiles Zinc finger CCHC-type profile. 769 784 IPR001878 GO:0003676|GO:0008270
Arst8g03564 918 ProSiteProfiles Zinc finger GRF-type profile. 804 843 IPR010666 GO:0008270
Arst8g03564 918 MobiDBLite consensus disorder prediction 378 405 - -
Arst8g03564 918 SMART c2hcfinal6 899 915 IPR001878 GO:0003676|GO:0008270
Arst8g03564 918 SMART c2hcfinal6 768 784 IPR001878 GO:0003676|GO:0008270
Arst8g03564 918 Pfam DNA topoisomerase 170 589 IPR013497 GO:0003677|GO:0003916|GO:0006265
Arst8g03564 918 Pfam Toprim domain 9 153 IPR006171 -
Arst8g03564 918 SUPERFAMILY Retrovirus zinc finger-like domains 753 790 IPR036875 GO:0003676|GO:0008270
Arst8g03564 918 PANTHER PROKARYOTIC DNA TOPOISOMERASE 7 800 IPR000380 GO:0003677|GO:0003917|GO:0006265
Arst8g03564 918 Gene3D - 2 169 - -
Arst8g03564 918 CDD TOP1Ac 173 600 IPR013497 GO:0003677|GO:0003916|GO:0006265
Arst8g03564 918 FunFam DNA topoisomerase 4 169 - -
Arst8g03564 918 PRINTS Prokaryotic DNA topoisomerase I signature 416 432 IPR013497 GO:0003677|GO:0003916|GO:0006265
Arst8g03564 918 PRINTS Prokaryotic DNA topoisomerase I signature 116 129 IPR013497 GO:0003677|GO:0003916|GO:0006265
Arst8g03564 918 PRINTS Prokaryotic DNA topoisomerase I signature 514 528 IPR013497 GO:0003677|GO:0003916|GO:0006265
Arst8g03564 918 PRINTS Prokaryotic DNA topoisomerase I signature 216 234 IPR013497 GO:0003677|GO:0003916|GO:0006265
Arst8g03564 918 PRINTS Prokaryotic DNA topoisomerase I signature 334 343 IPR013497 GO:0003677|GO:0003916|GO:0006265
Arst8g03564 918 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 329 343 IPR023406 GO:0003917
Arst8g03564 918 SMART topIban2 145 246 IPR003601 GO:0003677|GO:0003916|GO:0006265
Arst8g03564 918 MobiDBLite consensus disorder prediction 845 890 - -
Arst8g03564 918 SUPERFAMILY Prokaryotic type I DNA topoisomerase 8 598 IPR023405 -
Arst8g03564 918 Gene3D Topoisomerase I, domain 3 240 498 IPR013825 -
Arst8g03564 918 Gene3D Topoisomerase I, domain 2 176 600 IPR013824 -
Arst8g03564 918 SMART topIaneu2 292 552 IPR003602 GO:0003677|GO:0003916|GO:0006265
Arst8g03564 918 Pfam Zinc knuckle 768 784 IPR001878 GO:0003676|GO:0008270
Arst8g03564 918 Gene3D Topoisomerase I, domain 4 300 430 IPR013826 -
Arst8g03564 918 ProSiteProfiles Toprim domain profile. 7 154 IPR006171 -
Arst8g03564 918 Gene3D - 758 795 - -
Arst8g03564 918 FunFam DNA topoisomerase 431 498 - -
Arst8g03564 918 CDD TOPRIM_TopoIA_TopoIII 7 166 IPR034144 -
Arst8g03564 918 FunFam DNA topoisomerase 300 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g03564 Arst-Chr8 46280857 46298034 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g03564 K03165 - qsa:O6P43_028616 1525.38