Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi4g0834 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0835 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0836 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0837 . . . . . . . . Aev03g0690 . Ahy13g3563 . Aip03g04009 . . . Amo13g4525 . . . . . . . . . . . . . . . . . Dod04g0179 . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu6g02204 . Lasa5g01634 . . . . . . . . . . . . . Mepo3g05332 . Mesa9g02597 . . . . . . . Phco11g01528 . . . . . Pste7g01928 . . . . . Pumo1g00074 . Pvu6g0909 . Rops11g03447 . Seca8g01223 . Spst6g00283 . . . Sto9g2356 . . . Trre5g00723 . . . Vian6g00806 . . . Vimu2g01886 . Viun6g01430 . Vivi3g04624 . .
Vvi4g0838 . . . . Adu07g01069 . . . . . . . . . . . . . . . Arst7g01441 . Bach3g01060 . . . Bva13g01376 . . . . Cca05g01406 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu6g02203 Lasa2g01507 Lasa5g01636 . . . . . . . . . . . . Mepo7g02051 Mepo3g05333 . . . . . . . . Phco3g00528 Phco11g01527 . . . . Pste8g01538 Pste7g01931 Pte16g00752 Pte8g00592 . Pte8g00592 Pumo9g02514 Pumo1g00075 Pvu8g2492 Pvu6g0910 . Rops11g03448 . . . Spst6g00284 . Ssu6g2828 . . . . . . . . Vian7g01732 Vian6g00807 Vifa1g01727 Vifa2g01484 Vimu1g01169 Vimu2g01885 Viun8g02088 Viun6g01431 . Vivi3g04623 . Vra6g0766
Vvi4g0839 . . . . . . . . . Aev07g2251 . Ahy17g1218 . Aip07g01145 . . . . . . . . . . . . . . . . . . . . . Dod08g0876 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0840 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0841 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0842 . . . . . . . Aed3g1999 . . . . . . . . . . . . . . . . . . Bva13g01374 . . . . Cca05g01408 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu6g2831 . . . . . . . . . . . . . . . . . . . Vra6g0764
Vvi4g0843 . . . . Adu07g01056 . . . . Aev07g2254 . Ahy17g1212 . Aip07g01138 . . . Amo17g0559 . . Arst7g01424 . . . . . Bva13g01373 . . . . Cca05g01409 . . . Dod08g0872 . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa2g01504 . . . . . . . . . . . . . Mepo7g02057 . Mesa17g03408 . . . . . . . Phco3g00538 . . . . . Pste8g01533 . . Pte8g00596 . . Pumo9g02510 . Pvu8g2483 . Rops9g01057 . Seca8g01217 . . . . Ssu6g2832 . Sto9g2358 . . . . . . Vian7g01729 . Vifa1g01718 . Vimu1g01164 . Viun8g02091 . . . . Vra6g0762
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi4g0834 Chr4 10818526 10820107 -
Vvi Vvi4g0835 Chr4 10836816 10849085 +
Vvi Vvi4g0836 Chr4 10849360 10849905 +
Vvi Vvi4g0837 Chr4 10885537 10888669 +
Aev Aev03g0690 Chr03 5158071 5160254 +
Ahy Ahy13g3563 Chr13 133898343 133901725 -
Aip Aip03g04009 Chr03 123472030 123475510 -
Amo Amo13g4525 Chr13 141959913 141963318 -
Dod Dod04g0179 Chr04 2195822 2199293 +
Lapu Lapu6g02204 Chr6 21558789 21562306 -
Lasa Lasa5g01634 Chr5 390458030 390459541 +
Mepo Mepo3g05332 Chr3 66715648 66721121 +
Mesa Mesa9g02597 Chr9 53893420 53896744 +
Phco Phco11g01528 Chr11 11628069 11630224 -
Pste Pste7g01928 Chr7 17628096 17631036 +
Pumo Pumo1g00074 Chr1 1533263 1536598 +
Pvu Pvu6g0909 Chr6 20539952 20543312 +
Rops Rops11g03447 Chr11 66143614 66146723 +
Seca Seca8g01223 Chr8 18925040 18927848 +
Spst Spst6g00283 Chr6 2842800 2844981 +
Sto Sto9g2356 Chr9 26790627 26792886 -
Trre Trre5g00723 Chr5 4978510 4982541 -
Vian Vian6g00806 Chr6 25110604 25112714 +
Vimu Vimu2g01886 Chr2 13716209 13719238 -
Viun Viun6g01430 Chr6 22770653 22774037 +
Vivi Vivi3g04624 Chr3 84261099 84263973 -
Vvi Vvi4g0838 Chr4 10905206 10909691 +
Adu Adu07g01069 Chr07 15118073 15120222 +
Arst Arst7g01441 Chr7 15227313 15229561 +
Bach Bach3g01060 Chr3 20997687 20998913 -
Bva Bva13g01376 Chr13 7194840 7197440 +
Cca Cca05g01406 Chr05 32462053 32466633 -
Lapu Lapu6g02203 Chr6 21556089 21557654 -
Lasa Lasa2g01507 Chr2 462125919 462128580 +
Lasa Lasa5g01636 Chr5 390480877 390486445 +
Mepo Mepo7g02051 Chr7 30832443 30835892 -
Mepo Mepo3g05333 Chr3 66722201 66724170 +
Phco Phco3g00528 Chr3 4095074 4096797 -
Phco Phco11g01527 Chr11 11625614 11626716 -
Pste Pste8g01538 Chr8 8670037 8671708 +
Pste Pste7g01931 Chr7 17632771 17642044 +
Pte Pte16g00752 Chr16 25088324 25092148 -
Pte Pte8g00592 Chr8 28269384 28272165 -
Pte Pte8g00592 Chr8 28269384 28272165 -
Pumo Pumo9g02514 Chr9 59940995 59943041 +
Pumo Pumo1g00075 Chr1 1538348 1539968 +
Pvu Pvu8g2492 Chr8 55529938 55532235 +
Pvu Pvu6g0910 Chr6 20544891 20546039 +
Rops Rops11g03448 Chr11 66150572 66154384 +
Spst Spst6g00284 Chr6 2846517 2848171 +
Ssu Ssu6g2828 Chr6 65551783 65553911 -
Vian Vian7g01732 Chr7 27123913 27125674 +
Vian Vian6g00807 Chr6 25119093 25120223 +
Vifa Vifa1g01727 Chr1 282172913 282175161 +
Vifa Vifa2g01484 Chr2 400987046 400997864 +
Vimu Vimu1g01169 Chr1 9032616 9034449 +
Vimu Vimu2g01885 Chr2 13707586 13710107 -
Viun Viun8g02088 Chr8 31285578 31287827 -
Viun Viun6g01431 Chr6 22774357 22776084 +
Vivi Vivi3g04623 Chr3 84234105 84241232 -
Vra Vra6g0766 Chr6 7464604 7466846 +
Vvi Vvi4g0839 Chr4 10919740 10920801 -
Aev Aev07g2251 Chr07 23461255 23462376 +
Ahy Ahy17g1218 Chr17 18103547 18105571 -
Aip Aip07g01145 Chr07 16354342 16355921 -
Dod Dod08g0876 Chr08 10637750 10639880 -
Vvi Vvi4g0840 Chr4 10997910 11025564 +
Vvi Vvi4g0841 Chr4 11088599 11088721 +
Vvi Vvi4g0842 Chr4 11088809 11102982 +
Aed Aed3g1999 Chr3 24060937 24069409 +
Bva Bva13g01374 Chr13 7179669 7182545 -
Cca Cca05g01408 Chr05 32499730 32510622 +
Ssu Ssu6g2831 Chr6 65624607 65626031 +
Vra Vra6g0764 Chr6 7422046 7428944 -
Vvi Vvi4g0843 Chr4 11130900 11137298 +
Adu Adu07g01056 Chr07 14824324 14828926 -
Aev Aev07g2254 Chr07 23485890 23496336 +
Ahy Ahy17g1212 Chr17 17936217 17940644 -
Aip Aip07g01138 Chr07 16190067 16194622 -
Amo Amo17g0559 Chr17 11592542 11597125 -
Arst Arst7g01424 Chr7 14934162 14938616 -
Bva Bva13g01373 Chr13 7172333 7177700 -
Cca Cca05g01409 Chr05 32526094 32531252 +
Dod Dod08g0872 Chr08 10593357 10598098 -
Lasa Lasa2g01504 Chr2 461849337 461852774 -
Mepo Mepo7g02057 Chr7 30886658 30892141 +
Mesa Mesa17g03408 Chr17 60093897 60098288 +
Phco Phco3g00538 Chr3 4186135 4190378 +
Pste Pste8g01533 Chr8 8603552 8607833 -
Pte Pte8g00596 Chr8 28479587 28483871 +
Pumo Pumo9g02510 Chr9 59818416 59823894 -
Pvu Pvu8g2483 Chr8 55416105 55420985 -
Rops Rops9g01057 Chr9 17324454 17328875 -
Seca Seca8g01217 Chr8 18815190 18818624 -
Ssu Ssu6g2832 Chr6 65681760 65686526 +
Sto Sto9g2358 Chr9 26815472 26819359 +
Vian Vian7g01729 Chr7 27065968 27070129 -
Vifa Vifa1g01718 Chr1 280796697 280800171 -
Vimu Vimu1g01164 Chr1 8945788 8947123 -
Viun Viun8g02091 Chr8 31333870 31338649 +
Vra Vra6g0762 Chr6 7398218 7402898 -
Aev Aev07g2254 Chr07 23485890 23496336 +
Ahy Ahy17g1212 Chr17 17936217 17940644 -
Aip Aip07g01138 Chr07 16190067 16194622 -
Amo Amo17g0559 Chr17 11592542 11597125 -
Dod Dod08g0872 Chr08 10593357 10598098 -
Adu Adu07g01056 Chr07 14824324 14828926 -
Arst Arst7g01424 Chr7 14934162 14938616 -
Lasa Lasa2g01504 Chr2 461849337 461852774 -
Mepo Mepo7g02057 Chr7 30886658 30892141 +
Mesa Mesa17g03408 Chr17 60093897 60098288 +
Phco Phco3g00538 Chr3 4186135 4190378 +
Pste Pste8g01533 Chr8 8603552 8607833 -
Pte Pte8g00596 Chr8 28479587 28483871 +
Pumo Pumo9g02510 Chr9 59818416 59823894 -
Pvu Pvu8g2483 Chr8 55416105 55420985 -
Rops Rops9g01057 Chr9 17324454 17328875 -
Seca Seca8g01217 Chr8 18815190 18818624 -
Vian Vian7g01729 Chr7 27065968 27070129 -
Vifa Vifa1g01718 Chr1 280796697 280800171 -
Vimu Vimu1g01164 Chr1 8945788 8947123 -
Viun Viun8g02091 Chr8 31333870 31338649 +