Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01729 ATGGCGTTCCAGAAGATCAGCGTCGCCAATCCCATCGTCGAGATGGACGGAGATGAAATGACTAGGGTTATCTGGAAATCAATCAAGGACAAGCTCATTTTGCCTTTCTTGGAGTTGGACATAAAGTATTATGACCTTGGTCTTCCATACCGTGATGAGACCGATGATAAAGTTACAATTGAAAGCGCAGAAGCTACTCTCAAATACAACGTAGCAATCAAATGTGCAACTATCACTCCAGATGAGGCTCGTGTGAAGGAGTTTGGCCTGAAGAATATGTGGAAGAGTCCAAATGGGACAATTAGGAACATTTTGAATGGAACTGTCTTCAGAGAACCAATTCTTTGCAAAAACATTCCGCGCCTTGTTCCTGGTTGGACAAAGGCAATATGCATCGGAAGACATGCATTTGGTGACCAATATCGGGCTACTGACGCAGTAATTAAAGGAGCTGGAAAGCTGAAGCTGGTGTTTGTTCCAGAAGGCCAAGGTGAGAAGACTGAATTAGAGGTTTTTGACTTTACTGGTGAGGGAGGCGTTTCATTGGCTATGTACAATACTGATGAGTCAATTCGTTCTTTTGCCGAGGCTTCTATGGCAACTGCTTTAGAGAAAAAGTGGCCTCTTTATCTTAGCACCAAAAATACAATTCTTAAGAAATATGATGGAAGATTCAAGGACATATTTCAGGAAGTTTACGAGGCAAGCTGGAAATCAAAGTTTGAGGCTGCTGGTATATGGTATGAACATCGGCTCATTGATGATATGGTGGCTTATGCACTTAAGAGTGAAGGAGGTTACGTATGGGCATGCAAAAACTATGATGGTGATGTGCAGAGTGATTTCTTAGCTCAAGGTTTTGGATCATTGGGTTTGATGACATCTGTACTGGTTTGCCCTGACGGAAAGACTATTGAAGCAGAAGCGGCCCATGGAACAGTTACCCGTCATTTTAGGGTTCATCAGAAAGGAGGCGAAACCAGCACAAATAGCATAGCATCCATCTTTGCCTGGACGAGAGGGCTAGCTCACAGGGCAAAACTGGATAACAATGCTAAACTGTTGGATTTCACTGAAAAGCTAGAGGCAGCTTGCATTGGAGTTGTTGAGGCTGGGAAGATGACCAAGGACTTGGCACTTATTATTCATGGATCCAAGCTTTCAAGAGAGCACTATTTGAACACAGAGGAGTTCATCGATGCCGTGGCAGCCGATCTTAGAAATAAGCTTTCTGCATAG 1239 0.435 MAFQKISVANPIVEMDGDEMTRVIWKSIKDKLILPFLELDIKYYDLGLPYRDETDDKVTIESAEATLKYNVAIKCATITPDEARVKEFGLKNMWKSPNGTIRNILNGTVFREPILCKNIPRLVPGWTKAICIGRHAFGDQYRATDAVIKGAGKLKLVFVPEGQGEKTELEVFDFTGEGGVSLAMYNTDESIRSFAEASMATALEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEASWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWTRGLAHRAKLDNNAKLLDFTEKLEAACIGVVEAGKMTKDLALIIHGSKLSREHYLNTEEFIDAVAADLRNKLSA 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01729 412 PANTHER NADP-SPECIFIC ISOCITRATE DEHYDROGENASE 4 410 IPR004790 GO:0004450|GO:0006102
Vian7g01729 412 ProSitePatterns Isocitrate and isopropylmalate dehydrogenases signature. 273 292 IPR019818 GO:0000287|GO:0016616|GO:0051287
Vian7g01729 412 NCBIfam isocitrate dehydrogenase (NADP(+)) 4 411 IPR004790 GO:0004450|GO:0006102
Vian7g01729 412 PIRSF IDH_NADP 1 412 IPR004790 GO:0004450|GO:0006102
Vian7g01729 412 SMART Iso_dh_2 11 402 IPR024084 -
Vian7g01729 412 Gene3D Isopropylmalate Dehydrogenase 3 412 - -
Vian7g01729 412 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 3 410 - -
Vian7g01729 412 Pfam Isocitrate/isopropylmalate dehydrogenase 8 402 IPR024084 -
Vian7g01729 412 FunFam Isocitrate dehydrogenase [NADP] 3 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01729 Vian-Chr7 27065968 27070129 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01729 K00031 - gmx:100791166 808.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01729 7 27065968 27070129 Vian7g01729 7 27065968 27070129 ECH