Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01217 ATGACTCGGGTTATCTGGAAGTCAATCAAGGACAAGCTTATTTTGCCCTTCTTGGAGTTGGACATCAAGTATTTTGACCTAGGCCTTCCTCATCGTGATGAGACTGATGATAAAGTTACGGTTGAAAGTGCAGAAGCAACTCTCAAGTATAATGTTGCAATCAAGTGTGCAACTATCACTCCAGATGAAGCTCGTGTTAAGGAATTTGGCCTGAAGAATATGTGGAAGAGTCCAAATGGGACAATTAGGAACATTTTGAATGGAACTGTCTTCAGAGAACCAATTCTTTGCAAAAATATTCCTCGCCTTGTTCCTGGTTGGACAAAGGCAATATGTATTGGAAGACATGCTTTTGGTGATCAATATCGGGCTACTGACACAGTAATTAAAGGAGCTGGAAAGTTGAAGCTGGTGTTTGAGGTAATTTTCTCGAGTTCTTCTATGCCTGTAGTTCCAGAAGGACAAGGTGAGAAGACTGAATTGGAGGTTTTTGACTTTACTGGTGAAGGAGGTGTTTCGTTGGCTATGTACAACACTGATGAGTCTATTCGTTCTTTTGCCGAGGCTTCTATGACAACTGCTTATGAGAAAAAATGGCCACTTTATCTTAGCACCAAAAATACAATCCTTAAGAAATATGATGGAAGATTCAAGGACATATTTCAAGAAGTTTATGAGGCAAGCTGGAAATCAAAGTTTGAGGCTGCTGGTATATGGTATGAGCATCGGCTCATTGATGATATGGTGGCGTATGCACTCAAGAGTGAAGGAGGTTATGTATGGGCATGCAAAAACTATGATGGAGATGTCCAGAGTGATTTCTTAGCTCAAGGTTTTGGATCATTGGGTTTGATGACATCTGTATTGGTAAGTGTTATTCCAGGTCCTTACACATTATAA 900 0.4022 MTRVIWKSIKDKLILPFLELDIKYFDLGLPHRDETDDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKNMWKSPNGTIRNILNGTVFREPILCKNIPRLVPGWTKAICIGRHAFGDQYRATDTVIKGAGKLKLVFEVIFSSSSMPVVPEGQGEKTELEVFDFTGEGGVSLAMYNTDESIRSFAEASMTTAYEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEASWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVSVIPGPYTL. 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01217 299 ProSitePatterns Isocitrate and isopropylmalate dehydrogenases signature. 265 284 IPR019818 GO:0000287|GO:0016616|GO:0051287
Seca8g01217 299 NCBIfam isocitrate dehydrogenase (NADP(+)) 1 291 IPR004790 GO:0004450|GO:0006102
Seca8g01217 299 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 1 291 - -
Seca8g01217 299 PANTHER NADP-SPECIFIC ISOCITRATE DEHYDROGENASE 1 291 IPR004790 GO:0004450|GO:0006102
Seca8g01217 299 Pfam Isocitrate/isopropylmalate dehydrogenase 1 291 IPR024084 -
Seca8g01217 299 Gene3D Isopropylmalate Dehydrogenase 1 294 - -
Seca8g01217 299 SMART Iso_dh_2 1 299 IPR024084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01217 Seca-Chr8 18815190 18818624 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01217 K00031 - gmx:100786103 547.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01217 8 18815190 18818624 Seca8g01217 8 18815190 18818624 ECH