Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01408 ATGGCCACCGCCGCCGACAAACTCCCCGCTCTCAAATCCGCCGTTGCCGGATTGAACGAAATCAGGTCCACATTCCCTTCGATCTTTTTTTTTTCGTTGCCACAGGATCTTGCGAATCGGAGTCTGATTCGTCTTATTCGTTGCAGTGAGAATGAGAAGAGCGGATTCATCAACCTCGTCTCTCGCTATCTCAGTGGCGAAGCGCAGCATGTTGAATGGAGCAAGATCCAGACGCCTACTGATGAAGTGGTTGTGCCTTACGATACTTTGGCGCCAACTCCTGATGGTTCTGCAGAGGTGAAGAATCTATTGGACAAGCTTGTGGTGTTGAAGCTAAATGGAGGCTTGGGAACAACTATGGGTTGCACTGGTCCAAAATCTGTCATTGAAGTTCGTGATGGGTTGACATTTCTAGATCTAATTGTCATCCAAATTGAGAATCTCAATTCCAAATATGGAAGCAATGTTCCTTTGCTTTTGATGAATTCATTCAACACTCATGATGACACTCAAAAGATTATTGAAAAGTACCAAAACTCGAATATTGAGATTCATACTTTTAACCAGAGCCAGTATCCTCGATTGGTTGTTGAGGACTTTTTGCCACTGCCTTCCAAAGGGCACACTGGCAAGGACGGATGGTACCCTCCTGGCCATGGTGATGTCTTCCCATCATTATCAAACAGTGGCAAACTTGATGCACTATTGTCACAGGGTAAAGAGTATGTATTTGTTGCCAATTCAGATAACTTGGGAGCTATAGTTGACTTGAAAATCTTAAATCATTTGATCGAGAACAAGAATGAATACTGTATGGAGGTGACTCCCAAAACATTGGCTGATGTTAAGGGTGGCACTTTGATTTCTTACGAAGGAAGGCTCCTGGAAATTGCCCAAGTCCCAGATGAACATGTCAATGAATTCAAGTCAATAGAGAAGTTCAAAATTTTCAACACAAACAATTTGTGGGTGAACTTAAAAGCAGTTAAAAGGCTTGTTGAAGCTGATGCCCTTAAGATGGAGATTATTCCCAATCCAAAGGAAGTTGATGGAGTAAAAGTTCTTCAGCTGGAAACTGCAGCTGGTGCAGCAATAAGGTTCTTTGACAATGCTATTGGGATTAATGTTCCTCGATCACGATTCCTTCCAGTGAAGGCAACTTCAGATTTACTTCTTGTCCAGTCTGATCTCTACACTTTGGAAGATGGATTTGTCATTCGAAACAAAGCTAGGGCAAATCCTGAAAACCCTTCTATTGAATTGGGGCCAGAATTTAAGAAGGTTAGCAACTTCTTGGGCCGCTTCAAGTCAATTCCTAGTATTGTTGAGCTTGACAGTCTAAAAGTGGCTGGCGATGTATGGTTTGGAGCTGGTGTTGTCCTCAAGGGGAAAGTCAGTATCGTAGCAAAGTCTGATGTAAAGTTGGAAGTTCCGGATGCTGCTGTCATTGCAGACAAGGAAATTAACGGCCCAGAGGACCTATTCGTAGGATCTCCATCCACGGCGGCGCCGAAGCCGAGCCGCTACGCTTGGCCACTGTCCGGGTTCACGCTACGTTTTATAACTCACTTCCAACTATATAACGCAAATTTTGTTACCGTTTCACCATCTTCCCTTTCTGTGGCTTCGTGTTTTCTTAATCGCCGATCCTCTCCGTGCTTCAGAAGATCAGCATACATGTTCACTAATGACCAGAGGCAACTAGAACGAACAGGGAGATATGGAACCCACAGGTTACAATTCCTTCAGGATTTGGTGACTGAGTTTCAGAACACATCTGAGGATGAAACTAGAGAGAAGAATTTGGCAAATTTGGCAAACTTTGCCTATGATCCTTACAACTACAACTTCTTGCGTCAGCTTAACGTTTTGGAGCTTTTCATTGACTGCTTAACTGAACCCAATGAAAAGCTTGTAGAATTTGGTATAGGAGGGATCTGCAATTCGTGTGTTGATCCAGCCAATGCTGCAATTGTAACTAGTGTTGGTGGGATACCTCTTATAATTCAATGTTTATCAAGCCCAGTTAGGAACACTGTTAATTATGCAATCGGGGCACTCTATTATATCTGTAACGAATCTAACAAGGAAGAAATTTTAAAGCCTGAAGTTATTGATGTCATCTGGAGGTATGCAGCTAGTGAAGAAGTTAGTGTGAGCTTCAGTAATCTGGCTAAAGCTTTTTTGAATAAACATCTATCAGTGAACTAG 2211 0.4274 MATAADKLPALKSAVAGLNEIRSTFPSIFFFSLPQDLANRSLIRLIRCSENEKSGFINLVSRYLSGEAQHVEWSKIQTPTDEVVVPYDTLAPTPDGSAEVKNLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRDGLTFLDLIVIQIENLNSKYGSNVPLLLMNSFNTHDDTQKIIEKYQNSNIEIHTFNQSQYPRLVVEDFLPLPSKGHTGKDGWYPPGHGDVFPSLSNSGKLDALLSQGKEYVFVANSDNLGAIVDLKILNHLIENKNEYCMEVTPKTLADVKGGTLISYEGRLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAVKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGINVPRSRFLPVKATSDLLLVQSDLYTLEDGFVIRNKARANPENPSIELGPEFKKVSNFLGRFKSIPSIVELDSLKVAGDVWFGAGVVLKGKVSIVAKSDVKLEVPDAAVIADKEINGPEDLFVGSPSTAAPKPSRYAWPLSGFTLRFITHFQLYNANFVTVSPSSLSVASCFLNRRSSPCFRRSAYMFTNDQRQLERTGRYGTHRLQFLQDLVTEFQNTSEDETREKNLANLANFAYDPYNYNFLRQLNVLELFIDCLTEPNEKLVEFGIGGICNSCVDPANAAIVTSVGGIPLIIQCLSSPVRNTVNYAIGALYYICNESNKEEILKPEVIDVIWRYAASEEVSVSFSNLAKAFLNKHLSVN 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01408 736 CDD UGPase_euk 113 400 IPR016267 GO:0003983|GO:0006011
Cca05g01408 736 Pfam UTP--glucose-1-phosphate uridylyltransferase 55 462 IPR002618 GO:0070569
Cca05g01408 736 SMART arm_5 611 651 IPR000225 GO:0005515
Cca05g01408 736 SMART arm_5 652 692 IPR000225 GO:0005515
Cca05g01408 736 PANTHER - 44 494 IPR016267 GO:0003983|GO:0006011
Cca05g01408 736 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 36 384 IPR029044 -
Cca05g01408 736 Gene3D - 576 731 IPR011989 -
Cca05g01408 736 SUPERFAMILY ARM repeat 580 718 IPR016024 -
Cca05g01408 736 Gene3D Hexapeptide repeat proteins 385 494 - -
Cca05g01408 736 PANTHER UTP-GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE 44 494 - -
Cca05g01408 736 SUPERFAMILY Nucleotide-diphospho-sugar transferases 48 472 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01408 Cca-Chr5 32499730 32510622 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01408 K00963 - gmx:100790112 845.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01408 05 32499730 32510622 Cca05g01408 05 32499730 32510622 ECH