Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi4g0844 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0845 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0846 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0847 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0848 . Acco10g1412 . Accr4g01345 . . . . . . . . . . . Alju08g1398 . . . . . . . . . Bisa09g0513 Bva13g01371 . . . . Cca05g01411 . Dere04g2058 . . . Enph1g0959 . Glsi08g0553 . . . . . . . . . . . . . . . . . . . . Lapu6g02196 Lapu6g02196 . Lasa5g01647 . . . . Lele01g1102 Lele02g1135 Lele03g1104 Lele04g1120 . . . . . Mepo3g05340 . Mesa9g02613 . Mibi05g1293 . . . . . Phco11g01518 . Prci8g0597 . . Pste8g01530 Pste7g01948 . Pte8g00597 . Pte8g00597 . . Pvu8g2481 Pvu6g0918 . . . . . Spst6g00290 . Ssu6g2834 Sto5g1717 Sto9g2359 . . . Trre5g00715 . . . Vian6g00813 . . Vimu1g01159 Vimu2g01878 . . . Vivi3g04611 . Vra6g0760
Vvi4g0849 . . . . . . . Aed3g2003 . . . . . . . . . . . . . . Bach3g01064 . . . Bva13g01370 . . . . Cca05g01413 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa2g01496 . . . . . . . . . . . . . Mepo7g02061 . Mesa17g03412 . . . . . . . Phco3g00542 . . . . . Pste8g01528 . . . . . Pumo9g02504 . Pvu8g2478 . Rops9g01050 . Seca8g01211 . . . . Ssu6g2836 . Sto9g2360 . . . . . . Vian7g01723 . Vifa1g01706 . Vimu1g01156 . Viun8g02095 . . . . Vra6g0758
Vvi4g0850 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0851 . . . . . . . . . . . . . . . . . . . . . . Bach3g01065 . . . Bva13g01369 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu6g01006 . . . . . . . . . . . . . . . . . . . . . . . . . Phco3g00543 . . . . . Pste8g01527 . . . . . Pumo9g02503 . Pvu8g2477 . . . Seca6g02385 . Spst1g02301 . . . . Sto9g2361 . . . . . . Vian7g01722 . . . Vimu1g01155 . Viun8g02097 . . . . .
Vvi4g0852 . . . . . . . . . . . Ahy17g1188 . Aip07g01123 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0853 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Lapu Lapu6g02196 Chr6 21472305 21479780 -
Pste Pste8g01530 Chr8 8568990 8575798 -
Pte Pte8g00597 Chr8 28489182 28493133 +
Pvu Pvu8g2481 Chr8 55401021 55401510 -
Vimu Vimu1g01159 Chr1 8908160 8913842 -
Vvi Vvi4g0844 Chr4 11138082 11138959 +
Vvi Vvi4g0845 Chr4 11211151 11211618 +
Vvi Vvi4g0846 Chr4 11211853 11212227 +
Vvi Vvi4g0847 Chr4 11263451 11263828 -
Vvi Vvi4g0848 Chr4 11271874 11277992 +
Acco Acco10g1412 Chr10 27892543 27894635 -
Accr Accr4g01345 Chr4 13237640 13239932 +
Alju Alju08g1398 Chr08 10831188 10833260 +
Bisa Bisa09g0513 Chr09 7543542 7547304 +
Bva Bva13g01371 Chr13 7154695 7160042 -
Cca Cca05g01411 Chr05 32543297 32549600 +
Dere Dere04g2058 Chr04 23579738 23584062 +
Enph Enph1g0959 Chr1 35900890 35903167 +
Glsi Glsi08g0553 Chr08 4565404 4568754 +
Lapu Lapu6g02196 Chr6 21472305 21479780 -
Lapu Lapu6g02196 Chr6 21472305 21479780 -
Lasa Lasa5g01647 Chr5 391590743 391593772 +
Lele Lele01g1102 Chr01 6471015 6472569 +
Lele Lele02g1135 Chr02 7271917 7282026 +
Lele Lele03g1104 Chr03 6447188 6449111 +
Lele Lele04g1120 Chr04 7065985 7067950 +
Mepo Mepo3g05340 Chr3 66825513 66831995 +
Mesa Mesa9g02613 Chr9 54085194 54090231 -
Mibi Mibi05g1293 Chr05 15578214 15581935 +
Phco Phco11g01518 Chr11 11542725 11549231 -
Prci Prci8g0597 Chr8 3996866 4000422 +
Pste Pste8g01530 Chr8 8568990 8575798 -
Pste Pste7g01948 Chr7 17777747 17787680 +
Pte Pte8g00597 Chr8 28489182 28493133 +
Pte Pte8g00597 Chr8 28489182 28493133 +
Pvu Pvu8g2481 Chr8 55401021 55401510 -
Pvu Pvu6g0918 Chr6 20637379 20644075 +
Spst Spst6g00290 Chr6 2924380 2930008 +
Ssu Ssu6g2834 Chr6 65713955 65720367 +
Sto Sto5g1717 Chr5 12303840 12306092 +
Sto Sto9g2359 Chr9 26824020 26827287 +
Trre Trre5g00715 Chr5 4880127 4887580 -
Vian Vian6g00813 Chr6 25194824 25200856 +
Vimu Vimu1g01159 Chr1 8908160 8913842 -
Vimu Vimu2g01878 Chr2 13621360 13627091 -
Vivi Vivi3g04611 Chr3 83882122 83887987 -
Vra Vra6g0760 Chr6 7373366 7378276 -
Vvi Vvi4g0849 Chr4 11299409 11300338 -
Aed Aed3g2003 Chr3 24115114 24116319 -
Bach Bach3g01064 Chr3 21035458 21036590 -
Bva Bva13g01370 Chr13 7152382 7153987 +
Cca Cca05g01413 Chr05 32580753 32581984 -
Lasa Lasa2g01496 Chr2 461595761 461596557 +
Mepo Mepo7g02061 Chr7 30927164 30929065 -
Mesa Mesa17g03412 Chr17 60134881 60136217 -
Phco Phco3g00542 Chr3 4234605 4235570 -
Pste Pste8g01528 Chr8 8542326 8543765 +
Pumo Pumo9g02504 Chr9 59732495 59733979 +
Pvu Pvu8g2478 Chr8 55376337 55377552 +
Rops Rops9g01050 Chr9 17194208 17195576 +
Seca Seca8g01211 Chr8 18728000 18729659 +
Ssu Ssu6g2836 Chr6 65751123 65752117 -
Sto Sto9g2360 Chr9 26827566 26828350 -
Vian Vian7g01723 Chr7 27015993 27016824 +
Vifa Vifa1g01706 Chr1 279701630 279702436 +
Vimu Vimu1g01156 Chr1 8886068 8886868 +
Viun Viun8g02095 Chr8 31379178 31380452 -
Vra Vra6g0758 Chr6 7352726 7353842 +
Vvi Vvi4g0850 Chr4 11381698 11383195 +
Vvi Vvi4g0851 Chr4 11384950 11386575 -
Bach Bach3g01065 Chr3 21039431 21041209 +
Bva Bva13g01369 Chr13 7148126 7149758 -
Lapu Lapu6g01006 Chr6 10166803 10168714 +
Phco Phco3g00543 Chr3 4237464 4238708 +
Pste Pste8g01527 Chr8 8536590 8537847 -
Pumo Pumo9g02503 Chr9 59717131 59718237 -
Pvu Pvu8g2477 Chr8 55373440 55374715 -
Seca Seca6g02385 Chr6 86147644 86149614 -
Spst Spst1g02301 Chr1 31711525 31712930 -
Sto Sto9g2361 Chr9 26830497 26831792 +
Vian Vian7g01722 Chr7 27011967 27013114 -
Vimu Vimu1g01155 Chr1 8881602 8882814 -
Viun Viun8g02097 Chr8 31382693 31383991 +
Vvi Vvi4g0852 Chr4 11444592 11463772 -
Ahy Ahy17g1188 Chr17 17618315 17621255 +
Aip Aip07g01123 Chr07 15886987 15889867 +
Vvi Vvi4g0853 Chr4 11495723 11499126 +