Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0835 ATGGATCCGCAACCCGAACCTGTTAGCTACATCTGTGGAGACTGTGGGCAAGAAAACACCCTGAAGCCTGGCGATGTGATTCAATGCCGTGAATGTGGTTACCGCATCTTGTACAAAAAGCGAACCCGTAGAATTGTGCAGTATGAAGCACGCTGA 156 0.4936 MDPQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR* 52
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0835 51 Gene3D RNA polymerase ii, chain L 1 51 - -
Vvi4g0835 51 SMART rpolcxc3 8 51 IPR006591 GO:0003677|GO:0003899|GO:0006351
Vvi4g0835 51 FunFam DNA-directed RNA polymerases II, IV and V subunit 12 1 51 - -
Vvi4g0835 51 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III 3 51 IPR039747 GO:0003899|GO:0008270
Vvi4g0835 51 Pfam DNA directed RNA polymerase, 7 kDa subunit 10 41 IPR006591 GO:0003677|GO:0003899|GO:0006351
Vvi4g0835 51 SUPERFAMILY RNA polymerase subunits 7 51 IPR029040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0835 Vvi-Chr4 10836816 10849085 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0835 K03009 - oeu:111370869 114.005