Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2483 ATGGCGTTCCAGAAGATCAACGTCGCCAATCCTATCGTCGAGATGGATGGAGATGAAATGACTAGGGTTATCTGGAAGTCAATCAAGGACAAGCTCATTTTGCCTTTCCTGGAGTTGGACATAAAGTATTATGACCTTGGTCTTCCATACCGTGATGAGACCGATGATAAAGTTACAACTGATAGCGCAGAAGCTACTCTCAAATACAATGTAGCAATCAAGTGTGCAACTATCACTCCAGATGAAGCTCGTGTGAAGGAGTTTGGCCTGAAGCAAATGTGGAAGAGTCCAAATGGGACAATTAGGAACATTTTGAATGGTACTGTCTTCAGAGAACCAATTCTTTGCAAAAACATTCCGCGCCTTGTTCCTGGTTGGACAAAGGCAATATGCATTGGAAGACATGCTTTTGGTGACCAATATCGGGCTACTGACTCAGTAATTAAAGGAGCTGGAAAGCTGACGCTGGTGTTTGAAGGCGGCGGTGAGAAGACTGAATTAGAGGTTTTTAACTTTAAAGGTGAAGGAGGCGTTTCTTTAGCTATGTACAATACTGATGAGTCTATTCGTTCTTTTGCCGAGGCTTCTATGACAACTGCTTTAGAGAAAAAGTGGCCACTTTATCTTAGTACCAAAAATACAATTCTTAAGAAATATGATGGAAGATTCAAGGACATATTTCAAGAAGTTTACGAGGCAAGCTGGAAATCAAAGTTTGAGGCTGCTGGTATATGGTATGAGCATCGGCTCATTGATGATATGGTGGCTTATGCCCTCAAGAGTGAAGGAGGTTACGTATGGGCATGCAAAAACTATGATGGTGATGTGCAGAGTGATTTCTTAGCTCAAGGTTTTGGATCATTGGGTTTGATGACATCTGTATTGGTTTGCCCTGACGGAAAGACTATTGAAGCAGAAGCAGCCCATGGAACAGTTACCCGTCATTTTAGGGTTCATCAGAAAGGAGGCGAAACCAGCACAAATAGCATAGCATCCATCTTTGCCTGGACAAGAGGTCTAGCCCACAGGGCAAAACTGGATGACAATGCTAAACTATTGGATTTCACTGAAAAGCTAGAGGCAGCTTGCATTGGAGTAGTAGAGGCTGGGAAGATGACCAAGGACTTGGCACTTATTCTTCATGGATCCAAGCTTTCAAGAGAGCACTATTTGAACACAGAGGAATTCATCGATGCCGTGGCAGCCGAGCTTAGAGATAAGATTTCTGCATAG 1233 0.4307 MAFQKINVANPIVEMDGDEMTRVIWKSIKDKLILPFLELDIKYYDLGLPYRDETDDKVTTDSAEATLKYNVAIKCATITPDEARVKEFGLKQMWKSPNGTIRNILNGTVFREPILCKNIPRLVPGWTKAICIGRHAFGDQYRATDSVIKGAGKLTLVFEGGGEKTELEVFNFKGEGGVSLAMYNTDESIRSFAEASMTTALEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEASWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWTRGLAHRAKLDDNAKLLDFTEKLEAACIGVVEAGKMTKDLALILHGSKLSREHYLNTEEFIDAVAAELRDKISA* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2483 410 SMART Iso_dh_2 11 400 IPR024084 -
Pvu8g2483 410 PIRSF IDH_NADP 1 410 IPR004790 GO:0004450|GO:0006102
Pvu8g2483 410 PANTHER ISOCITRATE DEHYDROGENASE [NADP] 2 410 - -
Pvu8g2483 410 ProSitePatterns Isocitrate and isopropylmalate dehydrogenases signature. 271 290 IPR019818 GO:0000287|GO:0016616|GO:0051287
Pvu8g2483 410 Gene3D Isopropylmalate Dehydrogenase 3 410 - -
Pvu8g2483 410 TIGRFAM nadp_idh_euk: isocitrate dehydrogenase, NADP-dependent 4 409 IPR004790 GO:0004450|GO:0006102
Pvu8g2483 410 PANTHER NADP-SPECIFIC ISOCITRATE DEHYDROGENASE 2 410 IPR004790 GO:0004450|GO:0006102
Pvu8g2483 410 Pfam Isocitrate/isopropylmalate dehydrogenase 7 400 IPR024084 -
Pvu8g2483 410 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 3 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2483 Pvu-Chr8 55416105 55420985 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2483 K00031 - gmx:100791166 792.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2483 8 55416105 55420985 Pvu8g2483 8 55416105 55420985 ECH