Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2832 ATGGGCTTCCAGAAGATCAAGGTCACCAACCCCATCGTCGAGATGGACGGAGATGAAATGACTCGGGTTATCTGGAAATCAATCAAGGACAAGCTCGTTTTGCCTTTCTTGGAGTTGGACATCAAGTATTTTGACCTAGGCCTTCCTTACCGTGATGAGACCGATGATAAAGTTACAGTTGAAAGTGCAGAGGCAACTCTCAAGTACAATGTTGCAATCAAGTGTGCAACTATCACTCCAGATGAAGCTCGTGTGAAGGAGTTTGCCCTGAAGCATATGTGGAAGAGTCCAAATGGGACGATTAGGAACATTTTGAATGGAACTGTCTTCAGAGAACCAATTCTTTGCAAAAACATTCCCCGCCTTGTTCCTGGTTGGACAAAACCAATTTGTATTGGAAGACATGCGTTCGGTGACCAATATCGGGCTACTGACACAGTAATTAAAGGAGCTGGAAAGCTGAAGCTGGTGTTTGTTCCAGAAGGCCAAGGTGAGAAGACTGAATTAGAGGTTTTTAACTTTACTGGTGAAGGAGGAGTTTCATTGGCTATGTACAATACTGATGAGTCTATTCGTTCTTTTGCCGAGGCTTCTATGGCAACTGCTTACAAGAAAAAGTGGCCACTTTATCTTAGcaccaaaaatacaattcttAAGAAATATGATGGAAGATTCAAGGACATATTTCAAGAAGTTTATGAGGCAAGCTGGAAATCAAAGTTTGAGGCTGCTGGTATATGGTATGAGCATCGGCTCATTGATGATATGGTGGCTTATGCACTTAAGAGTGAAGGAGGCTATGTATGGGCATGCAAAAACTATGATGGAGATGTCCAGAGTGATTTCTTAGCTCAAGGTTTTGGATCATTGGGTTTGATGACATCTGTATTGGTTTGCCCTGATGGAAAGACTATTGAAGCAGAAGCAGCCCATGGCACAGTTACCCGTCATTTTAGGGTTCATCAGAAGGGAGGTGAAACCAGCACAAATAGCATAGCATCCATCTTTGCCTGGACAAGAGGGCTAGCCCACAGGGCAAAACTGGATGACAATGCTAAACTCTTGGATTTCACTGAAAAGCTAGAGGCAGCTTGCATTGAAGTAGTAGAGTCTGGGAAGATGACCAAGGATTTGGCACTTATTATTCATGGATCCAAGCTTTCAAGGGAACACTATTTGAACACGGAGGAATTCATCGATGCCGTGGCTGCCGAGCTTAGAGTGAAGCTTTCTGCATAG 1239 0.4302 MGFQKIKVTNPIVEMDGDEMTRVIWKSIKDKLVLPFLELDIKYFDLGLPYRDETDDKVTVESAEATLKYNVAIKCATITPDEARVKEFALKHMWKSPNGTIRNILNGTVFREPILCKNIPRLVPGWTKPICIGRHAFGDQYRATDTVIKGAGKLKLVFVPEGQGEKTELEVFNFTGEGGVSLAMYNTDESIRSFAEASMATAYKKKWPLYLSTKNTILKKYDGRFKDIFQEVYEASWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWTRGLAHRAKLDDNAKLLDFTEKLEAACIEVVESGKMTKDLALIIHGSKLSREHYLNTEEFIDAVAAELRVKLSA 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2832 412 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 3 409 - -
Ssu6g2832 412 TIGRFAM nadp_idh_euk: isocitrate dehydrogenase, NADP-dependent 4 411 IPR004790 GO:0004450|GO:0006102
Ssu6g2832 412 Gene3D Isopropylmalate Dehydrogenase 3 412 - -
Ssu6g2832 412 ProSitePatterns Isocitrate and isopropylmalate dehydrogenases signature. 273 292 IPR019818 GO:0000287|GO:0016616|GO:0051287
Ssu6g2832 412 Pfam Isocitrate/isopropylmalate dehydrogenase 7 402 IPR024084 -
Ssu6g2832 412 PIRSF IDH_NADP 1 412 IPR004790 GO:0004450|GO:0006102
Ssu6g2832 412 SMART Iso_dh_2 11 402 IPR024084 -
Ssu6g2832 412 PANTHER NADP-SPECIFIC ISOCITRATE DEHYDROGENASE 2 412 IPR004790 GO:0004450|GO:0006102
Ssu6g2832 412 PANTHER ISOCITRATE DEHYDROGENASE [NADP] 2 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2832 Ssu-Chr6 65681760 65686526 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2832 K00031 - gmx:100791166 800.431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2832 6 65681760 65686526 Ssu6g2832 6 65681760 65686526 ECH