Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00528 ATGTCACCATTCGCAGTTGCCGCAGCACCATTCACACTGTCCATTCTCCTTACACTCGTCTCCTCTCACTACTCCTCCTCTTCCTCCGACTCTCCGCCCTCTCTGCAAGCTTCGCCGGAGTTCGCTGAGTGGCGATCCGCGCGCGCCACCTACTACGCCGCTGCGGATCCTCGCGACGCGGTGGGGGGCGCCTGTGGCTACGGAGACCTCGTCAAGGGCGGCTACGGCATGGCCACAGTGGGCCTCAGCGAGACGCTGTTCGAACGCGGCCAGATCTGCGGCGCATGCTTCGAGCTGCGCTGCGTGGACGACAACCGGTGGTGCATCCCCGGCACCTCCATCATCGTCACTGCCACAAACTTCTGCGCCCCCAACTACGGGTTCACCTCCGACGGCGGTGGCCACTGTAACCCTCCCAACAAACACTTCGTTCTCCCCATCGAAGCCTTTGAAAAGATCGCCATTTGGAAAGCCGGCAACATGCCCGTACAGTACCGCAGGATAAAGTGTAGGAAGGAAGGAGGGATTCGATTTACTGTTACTGGTTCTGGAATCTTCATTTCGGTGCTGATCAGCAATGTTGCTGGTCATGGAGACGTACTGGCTGTGAAGGTTAAAGGGTCAAGAACTGGTTGGCTCTCCATGGGTCGGAATTGGGGGCAAAATTGGCATGTAAATGCATTGCTGCAGAATCAACCCCTTTCGTTCGAAGTTACTTCTAATGATGGGAAAACTGTTACGTCTTACAATGTTGCTCCCAAGGATTGGACCTTTGGACAAACCTTTGAAGGCAAGCAATTTGAGACTTGA 810 0.5543 MSPFAVAAAPFTLSILLTLVSSHYSSSSSDSPPSLQASPEFAEWRSARATYYAAADPRDAVGGACGYGDLVKGGYGMATVGLSETLFERGQICGACFELRCVDDNRWCIPGTSIIVTATNFCAPNYGFTSDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRIKCRKEGGIRFTVTGSGIFISVLISNVAGHGDVLAVKVKGSRTGWLSMGRNWGQNWHVNALLQNQPLSFEVTSNDGKTVTSYNVAPKDWTFGQTFEGKQFET 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00528 269 Gene3D - 30 171 IPR036908 -
Phco3g00528 269 Pfam Lytic transglycolase 80 165 IPR009009 -
Phco3g00528 269 PRINTS Expansin signature 150 163 IPR002963 GO:0009664
Phco3g00528 269 PRINTS Expansin signature 133 150 IPR002963 GO:0009664
Phco3g00528 269 PRINTS Expansin signature 174 186 IPR002963 GO:0009664
Phco3g00528 269 PRINTS Expansin signature 221 242 IPR002963 GO:0009664
Phco3g00528 269 PRINTS Expansin signature 186 207 IPR002963 GO:0009664
Phco3g00528 269 PRINTS Expansin signature 114 124 IPR002963 GO:0009664
Phco3g00528 269 PRINTS Expansin signature 250 266 IPR002963 GO:0009664
Phco3g00528 269 PRINTS Expansin signature 74 88 IPR002963 GO:0009664
Phco3g00528 269 PRINTS Expansin signature 101 112 IPR002963 GO:0009664
Phco3g00528 269 CDD DPBB_EXPA_N 43 170 - -
Phco3g00528 269 PANTHER EXPANSIN-A15 22 267 IPR002963 GO:0009664
Phco3g00528 269 SUPERFAMILY Barwin-like endoglucanases 43 193 IPR036908 -
Phco3g00528 269 SUPERFAMILY PHL pollen allergen 172 264 IPR036749 -
Phco3g00528 269 SMART dpbb_1 79 165 IPR007112 -
Phco3g00528 269 PRINTS Expansin/Lol pI family signature 43 58 IPR007118 GO:0005576
Phco3g00528 269 PRINTS Expansin/Lol pI family signature 83 101 IPR007118 GO:0005576
Phco3g00528 269 PRINTS Expansin/Lol pI family signature 212 226 IPR007118 GO:0005576
Phco3g00528 269 PRINTS Expansin/Lol pI family signature 250 264 IPR007118 GO:0005576
Phco3g00528 269 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Phco3g00528 269 PRINTS Expansin/Lol pI family signature 158 174 IPR007118 GO:0005576
Phco3g00528 269 Pfam Expansin C-terminal domain 176 253 IPR007117 -
Phco3g00528 269 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 62 175 IPR007112 -
Phco3g00528 269 Gene3D - 175 267 IPR036749 -
Phco3g00528 269 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 185 264 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00528 Phco-Chr3 4095074 4096797 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00528 3 4095074 4096797 Phco3g00528 3 4095074 4096797 ECH
Phco11g01527 11 11625614 11626716 Phco3g00528 3 4095074 4096797 PCT