Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0559 ATGGGATTTGAGAAGATCAAGGTCGACAACCCCATCGTCGAGATGGACGGTGATGAAATGACCAGAGTTATCTGGAAGTCAATCAAGGATAAGCTCATTTTGCCCTTCATGGAGTTGGACATCAAGTATTTTGACCTTGGTCTTCCCTACCGTGATCAGACTGATGATAAAGTTACAGTTGAGAGTGCAGAAGCAACTCTTAAGTATAATGTAGCAATCAAGTGTGCAACCATCACGCCAGATGAGGCTCGAGTGAAGGAATTTGACCTCAAGCAAATGTGGAAGAGTCCAAATGGGACAATTAGGAACATTTTGAATGGAACTGTCTTCAGAGAACCCATTCTTTGCAAAAACGTCCCTCGCCTTGTTCCTGGCTGGACAAAGCCAATATGCATTGGAAGACACGCATTTGGTGATCAATATAGGGCCACTGACACAGTTATTAAAGGAGCTGGGAAATTAAAGCTGGTGTTCGTTCCAGAAAGTGGTGAAAAGACTGAACTAGAGGTTTTTAACTTCACCGGTGAAGGAGGTGTTTCAATGGCTATGTACAACACTGATGAGTCTATCCGTGCTTTTGCTGAGTCTTCTATGGCAACTGCTCTTGAGAAAAAATGGCCTCTTTATCTTAGCACCAAAAACACAATTCTTAAGAAATATGATGGAAGATTCAAGGACATATTCCAAGAAGTGTATGAGAAAAACTGGAAATCAAAGTATGAGGCTGCTGGTATATGGTATGAGCATCGGCTCATTGATGATATGGTGGCGTATGCACTCAAGAGTGAAGGAGGTTACGTATGGGCATGCAAGAACTATGATGGAGATGTCCAGAGTGATTTCTTAGCTCAAGGTTTTGGATCATTGGGTTTGATGACATCTGTATTGGTTTGCCCTGATGGGAAGACTATTGAAGCAGAAGCAGCTCACGGCACAGTAACGCGTCACTATAGGGTTCATCAGAAAGGAGGGGAAACCAGCACAAACAGCATAGCATCCATCTTTGCTTGGACTAGAGGGCTTGCCCACAGGGCAAAATTGGATAACAATGCCAGACTTTTGGATTTCACTCAAAAACTAGAAGCAGCTTGCATTGGAGTAGTGGAGGCTGGGAAGATGACCAAGGATTTGGCACTCATTATTCATGGACCCAAGCTTTCAAGGGAGAATTACCTGAACACCGAGGAGTTCATCGATGCAGTGGCAGCGGAACTAAAAGCACAGCTTTCTGCTTAG 1236 0.4377 MGFEKIKVDNPIVEMDGDEMTRVIWKSIKDKLILPFMELDIKYFDLGLPYRDQTDDKVTVESAEATLKYNVAIKCATITPDEARVKEFDLKQMWKSPNGTIRNILNGTVFREPILCKNVPRLVPGWTKPICIGRHAFGDQYRATDTVIKGAGKLKLVFVPESGEKTELEVFNFTGEGGVSMAMYNTDESIRAFAESSMATALEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEKNWKSKYEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTRGLAHRAKLDNNARLLDFTQKLEAACIGVVEAGKMTKDLALIIHGPKLSRENYLNTEEFIDAVAAELKAQLSA* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0559 411 Gene3D Isopropylmalate Dehydrogenase 4 411 - -
Amo17g0559 411 PANTHER NADP-SPECIFIC ISOCITRATE DEHYDROGENASE 2 411 IPR004790 GO:0004450|GO:0006102
Amo17g0559 411 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 3 409 - -
Amo17g0559 411 Pfam Isocitrate/isopropylmalate dehydrogenase 7 401 IPR024084 -
Amo17g0559 411 TIGRFAM nadp_idh_euk: isocitrate dehydrogenase, NADP-dependent 5 410 IPR004790 GO:0004450|GO:0006102
Amo17g0559 411 PIRSF IDH_NADP 1 411 IPR004790 GO:0004450|GO:0006102
Amo17g0559 411 PANTHER ISOCITRATE DEHYDROGENASE [NADP] 2 411 - -
Amo17g0559 411 ProSitePatterns Isocitrate and isopropylmalate dehydrogenases signature. 272 291 IPR019818 GO:0000287|GO:0016616|GO:0051287
Amo17g0559 411 SMART Iso_dh_2 11 401 IPR024084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0559 Amo-Chr17 11592542 11597125 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0559 K00031 - gmx:100791166 779.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0559 17 11592542 11597125 Amo17g0559 17 11592542 11597125 ECH