Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0843 ATGGCCTTCGACAAGATCAAAGTCGCCAACCCCATCGTTGAGATGGATGGAGATGAAATGACTCGAGTTTTCTGGAAATCAATCAAGGATAAGCTTATTTTTCCATTTCTGGAGTTGGATATAAAGTATTTTGATCTTGGGCTCCCTCATCGTGACGCCACTGATGATAAGGTTACAGTTGAAAGTGCAGAAGCTACACTTAAGTACAATGTAGCAATCAAGTGTGCAACTATTACTCCAGATGAAGGTCGCATGAAGGAATTCGACTTGAAGCAAATGTGGAAGAGTCCAAATGGGACAATTAGGAATATATTGAATGGCACCGTTTTCAGAGAACCAATCATTTGCAAAAACATTCCCAGGCTTGTCCCAAGTTGGACAAAGCCAATATGCATTGGAAGGCATGCTTTTGGTGATCAGTATCGAGCAACTGATACAGTGATTAAAGGAGCTGGGAAACTCAAATTGGTGTTTGTACCAGAAGGAAAAGATGAAAAGACAGAGCTTGAGGTTTTCAACTTTACAGGTGCTGGAGGAGTAGCATTGTCGATGTATAATACTGATGAGTCCATTTATGCTTTTGCTGAGGCTTCAATGAACACTGCTTACCTAAAACAGTGGCCCCTTTATCTTAGCACAAAAAATACTATTCTTAAGAAGTATGATGGGAGATTCAAGGACATATTCCAAGAAGTTTATGAGACCCAATGGAAATCAAAGTATGAGGCTGCTGGGATCTGGTATGAACACCGTCTCATTGATGATATGGTTGCTTATGCTCTCAAGAGTGAAGGAGGTTATGTGTGGGCATGCAAGAACTATGATGGAGATGTACAGAGTGATTTCTTAGCTCAAGGATTCGGATCTCTTGGTTTGATGACATCTGTGCTGGTTTGTCCAGATGGAAAGACCATAGAAGCTGAAGCTGCCCATGGGACAGTGACACGTCATTTCCGGGTTCATCAGAAAGGAGGTGAAACCAGTACAAACAGCATAGCCTCTATCTTTGCTTGGTCACGAGGCCTTGCACACAGGGCAAAGTTGGATGACAATGCTAGACTCTTGGATTTCACTGAGAAACTAGAAGCAGCTTGTGTTGGAACTGTGGAATCTGGAAAGATGACCAAGGATCTTGCACTTCTTATCCATGGATCTAAGGTGACGAGGGATTGGTATCTGAATACTGAAGAGTTCATCGATGCTGTGGCAGCAGAGCTGACAGCAAAACTTTCTTGCTAA 1239 0.4245 MAFDKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPHRDATDDKVTVESAEATLKYNVAIKCATITPDEGRMKEFDLKQMWKSPNGTIRNILNGTVFREPIICKNIPRLVPSWTKPICIGRHAFGDQYRATDTVIKGAGKLKLVFVPEGKDEKTELEVFNFTGAGGVALSMYNTDESIYAFAEASMNTAYLKQWPLYLSTKNTILKKYDGRFKDIFQEVYETQWKSKYEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWSRGLAHRAKLDDNARLLDFTEKLEAACVGTVESGKMTKDLALLIHGSKVTRDWYLNTEEFIDAVAAELTAKLSC* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0843 412 PIRSF IDH_NADP 1 412 IPR004790 GO:0004450|GO:0006102
Vvi4g0843 412 NCBIfam isocitrate dehydrogenase (NADP(+)) 5 411 IPR004790 GO:0004450|GO:0006102
Vvi4g0843 412 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 3 409 - -
Vvi4g0843 412 SMART Iso_dh_2 11 402 IPR024084 -
Vvi4g0843 412 ProSitePatterns Isocitrate and isopropylmalate dehydrogenases signature. 273 292 IPR019818 GO:0000287|GO:0016616|GO:0051287
Vvi4g0843 412 Gene3D Isopropylmalate Dehydrogenase 4 412 - -
Vvi4g0843 412 Pfam Isocitrate/isopropylmalate dehydrogenase 7 402 IPR024084 -
Vvi4g0843 412 PANTHER NADP-SPECIFIC ISOCITRATE DEHYDROGENASE 4 410 IPR004790 GO:0004450|GO:0006102
Vvi4g0843 412 FunFam Isocitrate dehydrogenase [NADP] 3 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0843 Vvi-Chr4 11130900 11137298 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0843 K00031 - vvi:100261578 840.876