Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01527 ATGTTCTGCATCACTTTGCCATCGCTTGTAGCAGCAACTACGACAACGAAATGCAAATCAATGTCAAAACTAACCCTTCTCTTTTTTCTTCTATTCACATTCTTCAATTCTTCAACAGTCACAAGTTTATACTCTCCTTCACCTCCCGCCGCGCCACTTTCCCAAACTACCCCTGATCCCGACTCCTCTCCACGCGCCGAGTGGCTCTTCGCCCACGCCACGCACTATGCCGCCCCCGACGCCCTTGGCGGCGCGTGCGGCTACGGCGACATTCCCAACGGCATGGCCACCGCCGCACTCAGCGAAGCCCTCTTCGACCGCGGCCAGATCTGCGGCGCCTGCTTCGAGCTCCGCTGCCGCGAGGAGGACTCCGACTTCGACCGCCGCTGGTGCATCTCCGGCGCGTCGGTTGTCGTCACCGCCACCAATTTCTGCGCACCGAACTACGGATCCGACGCCGAGAGCCTCAGCGGACATTGTAACCCTCCGAAGCAGCATTTCGTTCTCCCCATTGAAGTTTTCGAGAAAATCGCAATCTGGAAAACTGGCACTGGCAACATGCCAGTGCAGTATCGCAGGGTAGAGTGCAGAAGAGAAGGGGGAATCCGATTTACAATAAGTGGTTCTGGAATCTTCATTTCGGCACTGATTAGTAATGTGGGTGGAATGGGGAACATTGTGGGTGTGAAGATTAAGGGTTCAAAAAGTGGTTGGCTTTCTATGGGTAGGAACTGGGGTCAGAATTGGCATGTTAATGCTTTACTACAGAATCAACCTCTTTCTTTTGAGCTCACTGCTAGTAATGGAATAACTGTTACATCTTATAATGTTGCTCCCAAAGATTGGACCTTTGGACAATCTTTTCAGGGAAAACAATTTCATCAGACATCAATTTAA 897 0.5128 MFCITLPSLVAATTTTKCKSMSKLTLLFFLLFTFFNSSTVTSLYSPSPPAAPLSQTTPDPDSSPRAEWLFAHATHYAAPDALGGACGYGDIPNGMATAALSEALFDRGQICGACFELRCREEDSDFDRRWCISGASVVVTATNFCAPNYGSDAESLSGHCNPPKQHFVLPIEVFEKIAIWKTGTGNMPVQYRRVECRREGGIRFTISGSGIFISALISNVGGMGNIVGVKIKGSKSGWLSMGRNWGQNWHVNALLQNQPLSFELTASNGITVTSYNVAPKDWTFGQSFQGKQFHQTSI 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01527 298 SMART dpbb_1 97 191 IPR007112 -
Phco11g01527 298 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 83 201 IPR007112 -
Phco11g01527 298 PANTHER EXPANSIN-A15 28 293 IPR002963 GO:0009664
Phco11g01527 298 Gene3D - 201 293 IPR036749 -
Phco11g01527 298 CDD DPBB_EXPA_N 67 196 - -
Phco11g01527 298 PRINTS Expansin signature 200 212 IPR002963 GO:0009664
Phco11g01527 298 PRINTS Expansin signature 212 233 IPR002963 GO:0009664
Phco11g01527 298 PRINTS Expansin signature 276 292 IPR002963 GO:0009664
Phco11g01527 298 PRINTS Expansin signature 247 268 IPR002963 GO:0009664
Phco11g01527 298 PRINTS Expansin signature 92 106 IPR002963 GO:0009664
Phco11g01527 298 PRINTS Expansin signature 157 174 IPR002963 GO:0009664
Phco11g01527 298 Pfam Expansin C-terminal domain 202 279 IPR007117 -
Phco11g01527 298 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 211 290 IPR007117 -
Phco11g01527 298 Gene3D - 53 197 IPR036908 -
Phco11g01527 298 PRINTS Expansin/Lol pI family signature 276 290 IPR007118 GO:0005576
Phco11g01527 298 PRINTS Expansin/Lol pI family signature 184 200 IPR007118 GO:0005576
Phco11g01527 298 PRINTS Expansin/Lol pI family signature 67 82 IPR007118 GO:0005576
Phco11g01527 298 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Phco11g01527 298 SUPERFAMILY Barwin-like endoglucanases 67 219 IPR036908 -
Phco11g01527 298 Pfam Lytic transglycolase 97 191 IPR009009 -
Phco11g01527 298 SUPERFAMILY PHL pollen allergen 198 289 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01527 Phco-Chr11 11625614 11626716 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01527 11 11625614 11626716 Phco11g01527 11 11625614 11626716 ECH
Phco11g01527 11 11625614 11626716 Phco3g00528 3 4095074 4096797 PCT