Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi4g0824 . . . . . . . . Aev03g0695 . Ahy13g3556 . Aip03g04005 . . . . . . . . . . . . . . . . . . . . . Dod04g0184 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto9g2353 . . . . . . . . . . . . . . . . . .
Vvi4g0825 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0826 . . . . . . . . Aev03g0694 . Ahy13g3557 . Aip03g04006 . . . . . . . . . . . . . Bva13g01380 . . . . Cca05g01401 . . Dod04g0183 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu6g2824 Sto5g1729 . . . . . . . . . . . . . . . . . . Vra6g0770
Vvi4g0827 . . . . . . . . . . Ahy13g3558 . Aip03g04007 Aip07g01162 . . Amo13g4522 . . . . . . . . . Bva13g01379 . . . . . . . Dod04g0182 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto5g1728 Sto9g2354 . . . . . . . . . . . . . . . . . .
Vvi4g0828 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0829 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0830 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0831 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0832 . . . . . . . . Aev03g0691 . Ahy13g3562 . Aip03g04008 . . . Amo13g4523 . . . . . . . . . . . . . . Cca05g01403 . . Dod04g0181 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu6g2825 . Sto9g2355 . . . . . . . . . . . . . . . . . Vra6g0769
Vvi4g0833 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva13g03462 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja5g1578 . Mal1g1322 . . . . . . . Mtr1g2853 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr1g1566 . . . Tsu01g03353 . . . . . . . . . . . .
   
Previous Page 495 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Ahy Ahy13g3558 Chr13 133823935 133830158 -
Aip Aip03g04007 Chr03 123411098 123417221 -
Amo Amo13g4522 Chr13 141901061 141906894 -
Dod Dod04g0182 Chr04 2226473 2234355 +
Vvi Vvi4g0824 Chr4 10612922 10627881 +
Aev Aev03g0695 Chr03 5219617 5224113 +
Ahy Ahy13g3556 Chr13 133798020 133801408 -
Aip Aip03g04005 Chr03 123386719 123390558 -
Dod Dod04g0184 Chr04 2249813 2254944 +
Sto Sto9g2353 Chr9 26757121 26761313 -
Vvi Vvi4g0825 Chr4 10629472 10638593 +
Vvi Vvi4g0826 Chr4 10642874 10646805 -
Aev Aev03g0694 Chr03 5197499 5216454 +
Ahy Ahy13g3557 Chr13 133805872 133810147 -
Aip Aip03g04006 Chr03 123394086 123397689 -
Bva Bva13g01380 Chr13 7232254 7236641 +
Cca Cca05g01401 Chr05 32399858 32428004 -
Dod Dod04g0183 Chr04 2241525 2246912 +
Ssu Ssu6g2824 Chr6 65500125 65504315 -
Sto Sto5g1729 Chr5 12453773 12458790 +
Vra Vra6g0770 Chr6 7497835 7501747 +
Vvi Vvi4g0827 Chr4 10683930 10694055 -
Ahy Ahy13g3558 Chr13 133823935 133830158 -
Aip Aip03g04007 Chr03 123411098 123417221 -
Aip Aip07g01162 Chr07 16774248 16777954 +
Amo Amo13g4522 Chr13 141901061 141906894 -
Bva Bva13g01379 Chr13 7222038 7228035 +
Dod Dod04g0182 Chr04 2226473 2234355 +
Sto Sto5g1728 Chr5 12435406 12442960 +
Sto Sto9g2354 Chr9 26763190 26775102 -
Vvi Vvi4g0828 Chr4 10697850 10714677 +
Vvi Vvi4g0829 Chr4 10730868 10731116 +
Vvi Vvi4g0830 Chr4 10751423 10763783 +
Vvi Vvi4g0831 Chr4 10781349 10781603 +
Vvi Vvi4g0832 Chr4 10795507 10796386 -
Aev Aev03g0691 Chr03 5162855 5172452 +
Ahy Ahy13g3562 Chr13 133893224 133895578 -
Aip Aip03g04008 Chr03 123459602 123464131 -
Amo Amo13g4523 Chr13 141940252 141942058 -
Cca Cca05g01403 Chr05 32446865 32448869 +
Dod Dod04g0181 Chr04 2203878 2204782 +
Ssu Ssu6g2825 Chr6 65521829 65523221 -
Sto Sto9g2355 Chr9 26787100 26788293 -
Vra Vra6g0769 Chr6 7491765 7493126 +
Vvi Vvi4g0833 Chr4 10810964 10812603 -
Bva Bva13g03462 Chr13 23601422 23613642 +
Lja Lja5g1578 Chr5 16787483 16801839 +
Mal Mal1g1322 Chr1 17039969 17062873 -
Mtr Mtr1g2853 Chr1 39703730 39722467 -
Tpr Tpr1g1566 Chr1 14510643 14533529 +
Tsu Tsu01g03353 Chr01 41498822 41515263 -
Bva Bva13g03462 Chr13 23601422 23613642 +