Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00538 ATGGCGTTCCAGAAGATCAACGTCGCCAATCCTATCGTCGAGATGGATGGAGATGAAATGACTAGGGTTATCTGGAAGTCAATCAAGGACAAGCTCATTTTGCCTTTCTTGGAGTTGGACATAAAGTATTATGACCTTGGGCTTCCATACCGTGATGAGACCGATGATAAAGTTACAACTGATAGCGCAGAAGCTACTCTCAAATACAATGTAGCAATCAAGTGTGCAACTATCACTCCAGATGAAGCTCGTGTGAAGGAGTTTGGCCTGAAGCAAATGTGGAAGAGTCCAAATGGGACAATTAGGAACATTTTGAATGGTACTGTCTTCAGAGAACCAATTCTTTGCAAAAACATTCCGCGCCTTGTTCCTGGTTGGACAAAGCCAATATGCATTGGAAGACATGCTTTTGGTGACCAATATCGGGCTACTGACACAGTAATTAAAGGAGCCGGAAAGCTGACACTGGTGTTTGTTCCAGAAGGCCAAGGTGAGAAGACTGAATTAGAGGTTTTTAACTTTAAAGGTGACGGAGGCGTTTCTTTAGCTATGTACAATACTGATGAGTCTATTCGTTCTTTTGCCGAGGCTTCTATGGCAACTGCTTTAGAGAAAAAGTGGCCACTTTATCTTAGTACCAAAAATACAATTCTTAAGAAATATGATGGAAGATTCAAGGACATATTTCAAGAAGTTTACGAGGCAAGCTGGAAAACAAAGTTTGAGGCTGCTGGTATATGGTATGAGCATCGGCTCATTGATGATATGGTGGCTTATGCCCTCAAGAGTGAAGGAGGTTATGTATGGGCATGCAAAAACTATGATGGTGATGTGCAGAGTGATTTCTTAGCTCAAGGTTTTGGATCATTGGGTTTGATGACATCTGTATTGGTTTGCCCTGACGGAAAGACTATTGAAGCAGAAGCAGCCCATGGAACAGTTACCCGTCATTTTAGGGTTCATCAGAAAGGAGGCGAAACCAGCACAAATAGCATAGCATCCATCTTTGCCTGGACAAGAGGTCTAGCCCACAGGGCAAAACTGGATGACAATGCTAAACTATTGGATTTCACTGAAAAGCTAGAGGCAGCTTGCATTGGAGTAGTAGAGGCTGGGAAGATGACCAAGGACTTGGCACTTATTCTTCATGGATCCAAGCTTTCAAGAGAGCACTATTTGAACACAGAGGAATTCATCGATGCCGTGGCTGCCGAGCTTAGAGATAAGCTTTCTGCATAG 1239 0.431 MAFQKINVANPIVEMDGDEMTRVIWKSIKDKLILPFLELDIKYYDLGLPYRDETDDKVTTDSAEATLKYNVAIKCATITPDEARVKEFGLKQMWKSPNGTIRNILNGTVFREPILCKNIPRLVPGWTKPICIGRHAFGDQYRATDTVIKGAGKLTLVFVPEGQGEKTELEVFNFKGDGGVSLAMYNTDESIRSFAEASMATALEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEASWKTKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWTRGLAHRAKLDDNAKLLDFTEKLEAACIGVVEAGKMTKDLALILHGSKLSREHYLNTEEFIDAVAAELRDKLSA 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00538 412 PANTHER NADP-SPECIFIC ISOCITRATE DEHYDROGENASE 4 410 IPR004790 GO:0004450|GO:0006102
Phco3g00538 412 Gene3D Isopropylmalate Dehydrogenase 3 412 - -
Phco3g00538 412 FunFam Isocitrate dehydrogenase [NADP] 3 412 - -
Phco3g00538 412 NCBIfam isocitrate dehydrogenase (NADP(+)) 4 411 IPR004790 GO:0004450|GO:0006102
Phco3g00538 412 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 3 410 - -
Phco3g00538 412 PIRSF IDH_NADP 1 412 IPR004790 GO:0004450|GO:0006102
Phco3g00538 412 SMART Iso_dh_2 11 402 IPR024084 -
Phco3g00538 412 ProSitePatterns Isocitrate and isopropylmalate dehydrogenases signature. 273 292 IPR019818 GO:0000287|GO:0016616|GO:0051287
Phco3g00538 412 Pfam Isocitrate/isopropylmalate dehydrogenase 7 402 IPR024084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00538 Phco-Chr3 4186135 4190378 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00538 3 4186135 4190378 Phco3g00538 3 4186135 4190378 ECH