Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01409 ATGACCTTCCACAAGATCACCGTCGCCAACCCCATCGTCGAGATGGACGGAGATGAAATGACTCGGGTTATCTGGAAGTCAATCAAGGACAAGCTAATTTTGCCCTTCTTGGAGTTGGACATCAAGTATTTTGACCTAGGCCTTCCTTACCGTGATGAGACCGATGATAAAGTTACAGTTGAAAGTGCTGAGGCAACTCTCAAGTACAATGTTGCAATCAAGTGTGCAACTATCACTCCAGATGAAGCTCGTGTGAAGGAGTTTGGCTTGAAGAGTATGTGGAAGAGTCCAAATGGGACAATTAGGAACATTTTGAATGGGACTGTCTTCAGAGAACCAATTCTCTGCAAAAACATTCCCCGCCTTGTTCCTGGTTGGACAAAGCCAATATGTATTGGAAGACATGCATTTGGTGACCAATATCGGGCTACTGACACTGTAATTAAAGGAGCTGGAAAGCTGAAGCTGGTGTTTGTTCCAGAAGGCCAAGGTGAGAAGACCGAATTAGAGGTTTTTAACTTTACCGGTGAAGGAGGTGTTTCATTGGCTATGTACAATACTGATGAGTCGATTCGATCTTTTGCCGATGCTTCTATGGCAACTGCTTATGAGAAGAAGTGGCCACTTTATCTTAGCACCAAAAATACTATACTTAAGAAATATGATGGAAGATTCAAGGACATATTTCAAGAAGTTTACGAGGCAAGCTGGAAATCTAAGTATGAGGCTGCTGGTATATGGTATGAGCATCGGCTCATTGATGATATGGTGGCGTATGCACTTAAGAGTGAAGGAGGTTATGTATGGGCATGCAAAAACTATGATGGAGATGTCCAGAGTGATTTCTTAGCTCAAGGTTTTGGATCATTAGGCTTGATGACATCTGTATTGGTTTGCCCTGATGGAAAGACTATTGAAGCAGAAGCAGCCCATGGCACAGTTACCCGTCATTTTAGGGTACATCAGAAGGGAGGTGAAACCAGCACAAATAGCATAGCATCCATCTTTGCCTGGACAAGAGGGCTAGCCCACAGGGCAAAACTGGATGACAATGCTAAACTCTTGGAGTTCACTGAAAAGCTAGAGGCAGCTTGCATTGAAGCAGTAGAGTCTGGGAAGATGACCAAGGATTTGGCACTTATTCTTCATGGATCCAAGCTTTCAAGGGAGCACTATTTGAACACAGAGGAATTCATCGATGCCGTGGCAGCCGGGCTTAGAGCGAAGCTTTCTGCATAG 1239 0.4415 MTFHKITVANPIVEMDGDEMTRVIWKSIKDKLILPFLELDIKYFDLGLPYRDETDDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKSMWKSPNGTIRNILNGTVFREPILCKNIPRLVPGWTKPICIGRHAFGDQYRATDTVIKGAGKLKLVFVPEGQGEKTELEVFNFTGEGGVSLAMYNTDESIRSFADASMATAYEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEASWKSKYEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWTRGLAHRAKLDDNAKLLEFTEKLEAACIEAVESGKMTKDLALILHGSKLSREHYLNTEEFIDAVAAGLRAKLSA 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01409 412 PANTHER ISOCITRATE DEHYDROGENASE [NADP] 2 412 - -
Cca05g01409 412 PIRSF IDH_NADP 1 412 IPR004790 GO:0004450|GO:0006102
Cca05g01409 412 TIGRFAM nadp_idh_euk: isocitrate dehydrogenase, NADP-dependent 5 411 IPR004790 GO:0004450|GO:0006102
Cca05g01409 412 ProSitePatterns Isocitrate and isopropylmalate dehydrogenases signature. 273 292 IPR019818 GO:0000287|GO:0016616|GO:0051287
Cca05g01409 412 PANTHER NADP-SPECIFIC ISOCITRATE DEHYDROGENASE 2 412 IPR004790 GO:0004450|GO:0006102
Cca05g01409 412 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 3 410 - -
Cca05g01409 412 Pfam Isocitrate/isopropylmalate dehydrogenase 7 402 IPR024084 -
Cca05g01409 412 SMART Iso_dh_2 11 402 IPR024084 -
Cca05g01409 412 Gene3D Isopropylmalate Dehydrogenase 4 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01409 Cca-Chr5 32526094 32531252 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01409 K00031 - gmx:100791166 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01409 05 32526094 32531252 Cca05g01409 05 32526094 32531252 ECH