Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi18g0216 . . . . . . . Aed10g0367 Aev08g0886 . Ahy17g2742 . Aip07g02992 . . . . . Apr9g0765 . . . . . . . Bva06g02890 Bva12g02046 Car05g02204 Car05g02517 . Cca03g01074 . . . . . . . . Gma04g02037 Gma06g01379 Gma14g01461 Gma13g00217 Gso4g1775 Gso4g1775 Gso4g1775 Gso4g1775 Lal4g0438 . . Lal6g0552 Lal18g1108 . . . . . . . . . . . . . . . . . . . Lja1g4968 Lja1g5801 . Mal2g1490 . . . . . . . Mtr3g3370 . . . Phco2g00760 . . . Psa5g1421 . . . . . . . . Pvu9g1606 Pvu1g0680 . . . . . . . Ssu1g2937 Sto5g0346 Sto9g2847 . Tpr3g3170 . . . Tsu07g01292 . . . . Vimu10g01835 Vimu1g02390 . . . . . .
Vvi18g0217 . . . . Adu08g00532 . . . . . . . . . . . . . . . Arst8g00689 . . . . . . Bva12g02047 . . . . . . . . . . . . Gma04g02334 Gma06g01066 . . Gso4g2046 Gso4g2046 . . . Lal17g0506 . Lal6g0551 Lal18g1109 . . . . . . . Lapu9g01438 . . . . . . . . . . . Lja1g4969 . . Mal2g1910 Mepo3g06441 . Mesa9g03954 . . . . Mtr3g3006 . . Phco7g01314 . . . . . Pste2g03248 . . . . . . . Pvu9g1357 . . . . . Spst9g01365 . . . . . . Tpr2g5439 Trre5g03623 . . . . . . . Vimu10g02332 . . . Vivi3g03004 . . .
Vvi18g0218 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0219 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0220 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0221 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0222 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0223 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0224 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0225 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Phco Phco2g00760 Chr2 8182304 8186039 -
Pvu Pvu1g0680 Chr1 8381806 8385990 -
Vimu Vimu1g02390 Chr1 34581566 34583029 -
Mal Mal2g1490 Chr2 17852322 17854952 +
Mtr Mtr3g3370 Chr3 47574429 47577285 -
Psa Psa5g1421 Chr5 110317186 110320297 -
Tpr Tpr3g3170 Chr3 34926230 34930962 +
Tsu Tsu07g01292 Chr07 11316341 11320299 +
Pvu Pvu9g1606 Chr9 22617152 22620144 +
Vimu Vimu10g01835 Chr10 26101263 26106418 +
Vvi Vvi18g0216 Chr18 1983110 1985445 -
Aed Aed10g0367 Chr10 2975196 2977042 +
Aev Aev08g0886 Chr08 5239234 5240896 -
Ahy Ahy17g2742 Chr17 125676796 125680962 -
Aip Aip07g02992 Chr07 116760025 116764059 -
Apr Apr9g0765 Chr9 13863126 13866268 -
Bva Bva06g02890 Chr06 18059925 18061258 +
Bva Bva12g02046 Chr12 16034801 16037258 -
Car Car05g02204 Chr05 67278329 67280314 +
Car Car05g02517 Chr05 70247808 70249840 -
Cca Cca03g01074 Chr03 26101730 26108746 +
Gma Gma04g02037 Chr04 50822918 50827306 +
Gma Gma06g01379 Chr06 12969318 12974138 -
Gma Gma14g01461 Chr14 31444326 31447602 +
Gma Gma13g00217 Chr13 11572985 11576308 +
Gso Gso4g1775 Chr4 47906195 47910902 +
Gso Gso4g1775 Chr4 47906195 47910902 +
Gso Gso4g1775 Chr4 47906195 47910902 +
Gso Gso4g1775 Chr4 47906195 47910902 +
Lal Lal4g0438 Chr4 3066099 3068848 +
Lal Lal6g0552 Chr6 3560329 3563373 +
Lal Lal18g1108 Chr18 14081285 14084419 -
Lja Lja1g4968 Chr1 69296633 69300155 -
Lja Lja1g5801 Chr1 103718775 103723161 -
Mal Mal2g1490 Chr2 17852322 17854952 +
Mtr Mtr3g3370 Chr3 47574429 47577285 -
Phco Phco2g00760 Chr2 8182304 8186039 -
Psa Psa5g1421 Chr5 110317186 110320297 -
Pvu Pvu9g1606 Chr9 22617152 22620144 +
Pvu Pvu1g0680 Chr1 8381806 8385990 -
Ssu Ssu1g2937 Chr1 77231576 77239179 -
Sto Sto5g0346 Chr5 2084740 2085300 -
Sto Sto9g2847 Chr9 29956754 29959304 -
Tpr Tpr3g3170 Chr3 34926230 34930962 +
Tsu Tsu07g01292 Chr07 11316341 11320299 +
Vimu Vimu10g01835 Chr10 26101263 26106418 +
Vimu Vimu1g02390 Chr1 34581566 34583029 -
Vvi Vvi18g0217 Chr18 1996714 1997619 -
Adu Adu08g00532 Chr08 9726182 9727169 -
Arst Arst8g00689 Chr8 9697538 9698607 -
Bva Bva12g02047 Chr12 16039198 16040369 -
Gma Gma04g02334 Chr04 53766560 53767716 -
Gma Gma06g01066 Chr06 9972835 9973833 +
Gso Gso4g2046 Chr4 50841680 50843363 -
Gso Gso4g2046 Chr4 50841680 50843363 -
Lal Lal17g0506 Chr17 3505746 3508137 +
Lal Lal6g0551 Chr6 3557121 3558363 +
Lal Lal18g1109 Chr18 14085939 14087534 -
Lapu Lapu9g01438 Chr9 28676623 28678020 -
Lja Lja1g4969 Chr1 69334731 69335954 -
Mal Mal2g1910 Chr2 23081674 23082534 -
Mepo Mepo3g06441 Chr3 78432655 78433855 +
Mesa Mesa9g03954 Chr9 71901494 71901937 +
Mtr Mtr3g3006 Chr3 44000527 44001783 +
Phco Phco7g01314 Chr7 11840144 11841208 +
Pste Pste2g03248 Chr2 32390199 32390954 +
Pvu Pvu9g1357 Chr9 19402207 19403359 +
Spst Spst9g01365 Chr9 13383565 13384527 +
Tpr Tpr2g5439 Chr2 61314975 61316715 -
Trre Trre5g03623 Chr5 34994697 34995590 +
Vimu Vimu10g02332 Chr10 34078289 34079853 +
Vivi Vivi3g03004 Chr3 50386784 50387915 -
Vvi Vvi18g0218 Chr18 2005999 2006346 -
Vvi Vvi18g0219 Chr18 2011536 2011862 -
Vvi Vvi18g0220 Chr18 2021584 2027079 -
Vvi Vvi18g0221 Chr18 2028373 2028591 -
Vvi Vvi18g0222 Chr18 2040670 2040903 -
Vvi Vvi18g0223 Chr18 2050288 2050563 -
Vvi Vvi18g0224 Chr18 2056215 2056571 -
Vvi Vvi18g0225 Chr18 2060341 2060598 -