Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi18g0206 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0207 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0208 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0209 . . . . Adu10g01817 . . Aed10g0371 Aev08g0882 . Ahy17g2732 . Aip07g02978 . . . . . . . Arst10g02316 . . . . . Bva06g02896 . Car05g02206 Car05g02515 . Cca03g01067 . . . . . . . . Gma04g02038 Gma06g01378 . . Gso4g1776 Gso4g1776 . . . Lal17g0508 . . . . . . . . . . . . . . . . . . . . . . Lja1g4964 . . Mal2g1491 . . . . . . . Mtr3g3369 . . . . . . . Psa5g1422 . . . . . . . . Pvu9g1608 . . . . . Spst9g01866 . . Ssu1g2929 . Sto9g2835 . Tpr3g3169 . . . Tsu07g01293 . . . . Vimu10g01839 . . . . . . .
Vvi18g0210 . . . . . . . . . . . . Aip07g02981 . . . Amo17g2639 . . . . . . . . . . . . . . . . . Dod08g1916 . . . . . . Gma06g01069 Gma14g01475 Gma13g00220 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja1g5795 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0211 . . . . . . . . . . . . . . . . . . Apr9g0754 . . . . . . . . Bva12g02044 . . . . . . . . . . . . Gma04g02332 Gma06g01068 Gma14g01474 Gma13g00219 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja1g4965 Lja1g5797 . Mal2g1904 . . . . . . . Mtr3g3011 . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto9g2840 . Tpr2g5433 . . . . . . . . . . . . . . . .
Vvi18g0212 . . . . . . . Aed10g0369 Aev08g0885 . . . Aip07g02985 . . . . . Apr9g0760 . . . . . . . . . Car05g02205 . . Cca03g01070 . . Dod08g1913 . . . . . . . Gma14g01466 Gma13g00218 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja1g5799 . Mal2g1906 . . . . . . . Mtr3g3010 . . . . . . . Psa5g1964 . . . . . . . . . . . . . . . . . Ssu1g2934 Sto5g0344 . . . . . . . . . . . . . . . . . . .
Vvi18g0213 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0214 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0215 . . . . . . . . . . Ahy17g2741 . Aip07g02990 . . . Amo17g2645 . Apr9g0763 . . . . . . . Bva06g02891 Bva12g02045 Car04g02982 . . . . . . . . . . . . . Gma14g01464 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja1g4967 Lja1g5800 . Mal2g1907 . . . . . . . Mtr3g3009 . . . . . . . . . . . . . . . . . . . . . . . . . . Sto5g0345 Sto9g2841 . Tpr2g5435 . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Adu Adu10g01817 Chr10 83250953 83254156 +
Arst Arst10g02316 Chr10 82167871 82172377 +
Pvu Pvu9g1608 Chr9 22632704 22638395 -
Spst Spst9g01866 Chr9 24345444 24349794 +
Vimu Vimu10g01839 Chr10 26168263 26172512 -
Vvi Vvi18g0206 Chr18 1826585 1828439 +
Vvi Vvi18g0207 Chr18 1835240 1835677 -
Vvi Vvi18g0208 Chr18 1841606 1842659 -
Vvi Vvi18g0209 Chr18 1857766 1863779 +
Adu Adu10g01817 Chr10 83250953 83254156 +
Aed Aed10g0371 Chr10 3002927 3008280 -
Aev Aev08g0882 Chr08 5214956 5218455 +
Ahy Ahy17g2732 Chr17 125423952 125429258 +
Aip Aip07g02978 Chr07 116550994 116556237 +
Arst Arst10g02316 Chr10 82167871 82172377 +
Bva Bva06g02896 Chr06 18099918 18106097 -
Car Car05g02206 Chr05 67304388 67311875 -
Car Car05g02515 Chr05 70229253 70234923 +
Cca Cca03g01067 Chr03 25879095 25885655 +
Gma Gma04g02038 Chr04 50836546 50841691 -
Gma Gma06g01378 Chr06 12952310 12960043 +
Gso Gso4g1776 Chr4 47919441 47925232 -
Gso Gso4g1776 Chr4 47919441 47925232 -
Lal Lal17g0508 Chr17 3515346 3522493 +
Lja Lja1g4964 Chr1 69146609 69154313 +
Mal Mal2g1491 Chr2 17875067 17879584 -
Mtr Mtr3g3369 Chr3 47560996 47566622 +
Psa Psa5g1422 Chr5 110701673 110707838 -
Pvu Pvu9g1608 Chr9 22632704 22638395 -
Spst Spst9g01866 Chr9 24345444 24349794 +
Ssu Ssu1g2929 Chr1 76848103 76852712 +
Sto Sto9g2835 Chr9 29882732 29887111 +
Tpr Tpr3g3169 Chr3 34916239 34921541 +
Tsu Tsu07g01293 Chr07 11335844 11341341 -
Vimu Vimu10g01839 Chr10 26168263 26172512 -
Vvi Vvi18g0210 Chr18 1877361 1877756 -
Aip Aip07g02981 Chr07 116562012 116567704 -
Amo Amo17g2639 Chr17 125794834 125798454 -
Dod Dod08g1916 Chr08 45776518 45783519 -
Gma Gma06g01069 Chr06 10000986 10004442 +
Gma Gma14g01475 Chr14 31733270 31736374 -
Gma Gma13g00220 Chr13 11778491 11782891 +
Lja Lja1g5795 Chr1 103521263 103522730 -
Vvi Vvi18g0211 Chr18 1877900 1880143 -
Apr Apr9g0754 Chr9 13476684 13480211 -
Bva Bva12g02044 Chr12 16023571 16026067 +
Gma Gma04g02332 Chr04 53745708 53749453 -
Gma Gma06g01068 Chr06 9995646 9998598 +
Gma Gma14g01474 Chr14 31713540 31726912 +
Gma Gma13g00219 Chr13 11766720 11769775 +
Lja Lja1g4965 Chr1 69154957 69159485 -
Lja Lja1g5797 Chr1 103526494 103530369 -
Mal Mal2g1904 Chr2 22968171 22970880 -
Mtr Mtr3g3011 Chr3 44046166 44048784 +
Sto Sto9g2840 Chr9 29921224 29932099 -
Tpr Tpr2g5433 Chr2 61255184 61258179 +
Vvi Vvi18g0212 Chr18 1885036 1894797 -
Aed Aed10g0369 Chr10 2985929 2989491 +
Aev Aev08g0885 Chr08 5229181 5230745 -
Aip Aip07g02985 Chr07 116658514 116662511 -
Apr Apr9g0760 Chr9 13657526 13660725 -
Car Car05g02205 Chr05 67291960 67294888 +
Cca Cca03g01070 Chr03 25913823 25916531 -
Dod Dod08g1913 Chr08 45744631 45749654 -
Gma Gma14g01466 Chr14 31620478 31624117 +
Gma Gma13g00218 Chr13 11705539 11709922 -
Lja Lja1g5799 Chr1 103546703 103548811 -
Mal Mal2g1906 Chr2 23024590 23027291 -
Mtr Mtr3g3010 Chr3 44034016 44037298 +
Psa Psa5g1964 Chr5 151911259 151913675 -
Ssu Ssu1g2934 Chr1 77058984 77146252 -
Sto Sto5g0344 Chr5 2068363 2070970 -
Vvi Vvi18g0213 Chr18 1897652 1912219 -
Vvi Vvi18g0214 Chr18 1934332 1948604 -
Vvi Vvi18g0215 Chr18 1952680 1968096 -
Ahy Ahy17g2741 Chr17 125627837 125631593 -
Aip Aip07g02990 Chr07 116714231 116717805 -
Amo Amo17g2645 Chr17 125941462 125946069 +
Apr Apr9g0763 Chr9 13814640 13816030 -
Bva Bva06g02891 Chr06 18077072 18080401 +
Bva Bva12g02045 Chr12 16026771 16029421 -
Car Car04g02982 Chr04 57241636 57247859 +
Gma Gma14g01464 Chr14 31554668 31558252 -
Lja Lja1g4967 Chr1 69258428 69263560 +
Lja Lja1g5800 Chr1 103549938 103558717 -
Mal Mal2g1907 Chr2 23033173 23036131 -
Mtr Mtr3g3009 Chr3 44027513 44030845 +
Sto Sto5g0345 Chr5 2073031 2075506 -
Sto Sto9g2841 Chr9 29934149 29936613 -
Tpr Tpr2g5435 Chr2 61266657 61287642 -