Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5801 ATGGACTCTGGTCTTTGCTTAGTCTCTGGACTGAAAAACCAAGATGTCCAAACTCGTCTCTTCGACCCATCTTGGCTACAGCTTCAGCCCCACATTCCCATGAGCTTCGTTTGGCCAAAGGAGTTCGTCGTGGACGCGCACGACGAGCTCCAAGCGCCATTGGTGGACCTCGATGGGTTCCTCAGAGGCGACAAAGAGGCCACGCACCATGCTTTTAAGCTCATTTCCCAAGCTTGCTTGACACACGGGTTCTTCCAAGTGATCAACCATGGGGTTGATCCACTCCTTATCCGCGAGGCGTATGAACAAATGGATGGTTTCTTTAAGCTTCCCATTCAGAGGAAAGTTAGTGTTCTTAAGAGACCAGGTTCCATGTGGGGTTATTCTGGTGCCCATGCTGACAGGTTCTCCTCTAAATTGCCATGGAAGGAGACCCTTTCTTTCCCATTCCATGAAAATGCCTTAAAGCCTGCTGTTACTACCTTCTTTAATTCCACCTTAGGGGAAGACTTTGATCAAGCTGGAGTGACATTCCAGAAGTATTGTGAAGCAATGAAGAAGCTGGGGATGAAACTGATGGAGTTACTGGCTATAAGCATGGGCGTTGATCGATCACATTACGAGAACTTGTTCAAAGATGGTTGCTCCATCATGAGATGCAACTATTACCCATCATGCCAGGAACCAAGTGTTGCATTAGGGACAGGGCCGCATTGTGACCCAACAACACTAACCATTCTTCACCAAGATCAAGTTGGAGGCCTTCAAGTGTTCACAGACCAAAAATGGCACACGGTTCGACCTCATCATGACGCACTTGTTGTTAACATTGGTGATACCTTCACGGCACTATCAAATGGGAGATACAAGAGTTGCCTGCACAGGGCAGTGGTTAACCAGCACAAAGAGAGGAGGTCCTTGGCATTCTTTCTGTGCCCAAAAGAAGACAAAGTGTTGAGACCCCCAGAAGATATTGTGCATAAGGATGGGACAAAACCGTATCCAGATTTCACGTGGTCTAATTTGCTTGAGTTCACACAAAAGTACTACAGAGCCGACGAATCCACCCTGCAAAACTTCACCAAGTGGTTGCTATCTTCTAAACCACAAACACCCAACAAATAG 1125 0.4711 MDSGLCLVSGLKNQDVQTRLFDPSWLQLQPHIPMSFVWPKEFVVDAHDELQAPLVDLDGFLRGDKEATHHAFKLISQACLTHGFFQVINHGVDPLLIREAYEQMDGFFKLPIQRKVSVLKRPGSMWGYSGAHADRFSSKLPWKETLSFPFHENALKPAVTTFFNSTLGEDFDQAGVTFQKYCEAMKKLGMKLMELLAISMGVDRSHYENLFKDGCSIMRCNYYPSCQEPSVALGTGPHCDPTTLTILHQDQVGGLQVFTDQKWHTVRPHHDALVVNIGDTFTALSNGRYKSCLHRAVVNQHKERRSLAFFLCPKEDKVLRPPEDIVHKDGTKPYPDFTWSNLLEFTQKYYRADESTLQNFTKWLLSSKPQTPNK* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5801 374 SUPERFAMILY Clavaminate synthase-like 29 352 - -
Lja1g5801 374 Pfam 2OG-Fe(II) oxygenase superfamily 216 313 IPR044861 -
Lja1g5801 374 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 213 313 IPR005123 -
Lja1g5801 374 Pfam non-haem dioxygenase in morphine synthesis N-terminal 53 153 IPR026992 -
Lja1g5801 374 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 14 367 - -
Lja1g5801 374 PRINTS Isopenicillin N synthase signature 75 92 - -
Lja1g5801 374 PRINTS Isopenicillin N synthase signature 301 319 - -
Lja1g5801 374 PRINTS Isopenicillin N synthase signature 238 259 - -
Lja1g5801 374 PANTHER GIBBERELLIN 20-OXIDASE 14 367 - -
Lja1g5801 374 Gene3D - 26 351 IPR027443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5801 Lja-Chr1 103718775 103723161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5801 31 360 Glycosyltransferase AT5G59530 29.107 6.89e-30 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5801 K05282 - gmx:100801187 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5801 1 103718775 103723161 Lja1g5801 1 103718775 103723161 ECH