Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1108 ATGGATTCAAGTCAATATTTTGTGTCTTCACTCAATCATCATCAAGAATCTCAAAGTCGTTTCTTTGACCCATCATGGCTAAAGAAGCAACCCAATGTGCCAATGAATTTCGTTTGGCCAAAGGAGTGTCTAGAAGATGCTCATGAAGAGCTCCAAGCGCCAGTGTTGGACCTTGAAGGGTTCCTAAGAGGTGACTATGAGGCCACACTTCATGCTGCTAAGCTCATACGTAAATCTTGCATGAGCCATGGCTTCTTCCAAGTTATTAACCATGGTGTTGATCCACTTCTCATTGGTGAAGCATATAATCAAATGGATGCATTCTTTAAGCTCCCAATTCATAGAAAATTAAGTGTTCTTAAGACTCAAGGTTCCATGTGGGGCTATTCTGGTGCCCATGCTGACCGGTTCTCCTCCAAATTGCCATGGAAGGAGACCCTCTCTTTCCCCTTCCATGGCAATAACTTGGAGCCTGTTGTCACCAACTACTTCATCTCCACCTTAGGGGAAGATTTTCAACAAGCTGGAGTGGAATTCCAGAAGTACTGTGAAGCAATGAAGGGGTTAGGGATGAAGGTGATAGAGCTATTGGCTATTAGCTTAGGTGTAGATAGGTTGCATTACAAGGACTTATTTGAAGATGGTTGTTCCATCATGAGATGCAACTATTACCCATCATGTCAACAACCAAGTCTTGCACTAGGGACAGGACCTCATTGTGACCCAACTTCTGTGACTATACTTCATCAAGATGATGTTGGAGGACTTCATGTGTTTGCAGACAACAAGTGGCAGATGGTGAAACCTCGTTCTGATGCTCTAGTTGTTAACATTGGTGATACCTTCAAGGCACTATCAAATGGGAGATACAAGAGTTGCCTGCATAGGGCAGTGGTGAACCAATACAAAGAGAGAAGGTCATTGGCATTCTTTCTGTGCCCAAAAGAAGACAAAGTGGTGAGACCCCCAGAGGATATTGTGCTCAAGGATGGGACAAAACAGTATCCAGATTTCACATGGTCCAATTTACTTGAATTCACACAAAAGTACTATAGAGCTGATGAAGCTACAATGCATAACTTCACCAAGTGGTTGCTATCCTCCAAACCACAAACCCCTTCAAGTTAA 1128 0.4309 MDSSQYFVSSLNHHQESQSRFFDPSWLKKQPNVPMNFVWPKECLEDAHEELQAPVLDLEGFLRGDYEATLHAAKLIRKSCMSHGFFQVINHGVDPLLIGEAYNQMDAFFKLPIHRKLSVLKTQGSMWGYSGAHADRFSSKLPWKETLSFPFHGNNLEPVVTNYFISTLGEDFQQAGVEFQKYCEAMKGLGMKVIELLAISLGVDRLHYKDLFEDGCSIMRCNYYPSCQQPSLALGTGPHCDPTSVTILHQDDVGGLHVFADNKWQMVKPRSDALVVNIGDTFKALSNGRYKSCLHRAVVNQYKERRSLAFFLCPKEDKVVRPPEDIVLKDGTKQYPDFTWSNLLEFTQKYYRADEATMHNFTKWLLSSKPQTPSS 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1108 375 Pfam 2OG-Fe(II) oxygenase superfamily 217 314 IPR044861 -
Lal18g1108 375 Gene3D - 26 346 IPR027443 -
Lal18g1108 375 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 13 368 - -
Lal18g1108 375 PRINTS Isopenicillin N synthase signature 76 93 - -
Lal18g1108 375 PRINTS Isopenicillin N synthase signature 239 260 - -
Lal18g1108 375 PRINTS Isopenicillin N synthase signature 274 300 - -
Lal18g1108 375 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 214 314 IPR005123 -
Lal18g1108 375 Pfam non-haem dioxygenase in morphine synthesis N-terminal 54 152 IPR026992 -
Lal18g1108 375 PANTHER GIBBERELLIN 20-OXIDASE 13 368 - -
Lal18g1108 375 SUPERFAMILY Clavaminate synthase-like 26 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1108 Lal-Chr18 14081285 14084419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1108 29 352 Glycosyltransferase AT5G59530 28.060 8.36e-31 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1108 K05282 - gmx:100801187 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1108 18 14081285 14084419 Lal18g1108 18 14081285 14084419 ECH