Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1421 ATGCAAATGGCTCCTCTAATGAATTCAAACACTTCAACTCTTGTACTTCACCCTTCATCACAAGCAGAGGAGCCCAAAAAAGAAAATATGCTTTCTATATTTGACTCAAATATGATTCAAAAACAAGTAAACATACCAAAAGAGTTCATTTGGCCATCTATAGACTTAGTTAACACAACCCAAGAAGAACTAAAAGAACCTCTCATAGACCTAAGTATCATGAAAGCTGGTGATGAAAAAGCTATTGCAAGTGCCGCCGAGCTTGTTAGAAAAGCATGCTTGAACCATGGATTTTTTCAAGTGATAAATCATGGTGTTGAACAAGATCTTATCAATGATGCTTATTGTGAAGTTGATTCCATTTTCAAGCAACCTATTAGCAAGAAGTTGAGTGCTAAGAGGGTAGCTGGTGGAATCTCTGGATACTCCGGTGCTCATGCAGATAGATACTCTTCTAAATTACCATGGAAAGAGACATTTTCTTTTGTATACAATCATCATCAAAATAGCTCCAACCCTCAGATTGTGAACTACTTCAAATCCGTCTTAGGTGAAGAGTTTCAAAACACAGGATTGGTGTATGAAAAGTACTGTGAAGCAATGAATGAATTAGCTTTAGTAATTATGGAGCTATTGGCCATTAGTTTGGGGATAGATCGTTTGCATTATAGAAGATTTTTTCAAGATGGTGACTCAATAATGAGGTGTAACTATTATCCACCTTGCAAAAGTTCAGGTCTCACCTTTGGTACAGGCCCTCACTCTGACCCTACTTCATTAACTATTCTTCATCAAGATCAAGTTGGAGGATTACAAGTTTTTGCAAATCACAAATGGCTTTCTGTTCGCCCTAGATCTGATGCCTTAGTCATAAACATAGGTGATACTTTCATGGCGTTATCAAATGGGAGATACAAGAGTTGTCTGCATAGAGCATTGGTGAACAAATATAGAGTAAGGAAATCATTGGTTTTCTTTGTGTGTCCAAGAGAAGACAAGGTTGTGAAACCATTAGAAAGTTTATTAAGCAAAAACGAAGCAAGAAAGTACCCTGATTTCACATGGGCTAGTTTGTTTGAGTTCACACAGAAACACTACAGAGCTGATGTTGCTACGCTTCAAAGCTTCTTTCAGTGGCATTCCTCTTCCAACTTATTATGA 1161 0.3738 MQMAPLMNSNTSTLVLHPSSQAEEPKKENMLSIFDSNMIQKQVNIPKEFIWPSIDLVNTTQEELKEPLIDLSIMKAGDEKAIASAAELVRKACLNHGFFQVINHGVEQDLINDAYCEVDSIFKQPISKKLSAKRVAGGISGYSGAHADRYSSKLPWKETFSFVYNHHQNSSNPQIVNYFKSVLGEEFQNTGLVYEKYCEAMNELALVIMELLAISLGIDRLHYRRFFQDGDSIMRCNYYPPCKSSGLTFGTGPHSDPTSLTILHQDQVGGLQVFANHKWLSVRPRSDALVINIGDTFMALSNGRYKSCLHRALVNKYRVRKSLVFFVCPREDKVVKPLESLLSKNEARKYPDFTWASLFEFTQKHYRADVATLQSFFQWHSSSNLL* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1421 386 MobiDBLite consensus disorder prediction 1 19 - -
Psa5g1421 386 Pfam 2OG-Fe(II) oxygenase superfamily 231 329 IPR044861 -
Psa5g1421 386 SUPERFAMILY Clavaminate synthase-like 39 368 - -
Psa5g1421 386 Gene3D - 27 361 IPR027443 -
Psa5g1421 386 Pfam non-haem dioxygenase in morphine synthesis N-terminal 67 170 IPR026992 -
Psa5g1421 386 PRINTS Isopenicillin N synthase signature 89 106 - -
Psa5g1421 386 PRINTS Isopenicillin N synthase signature 254 275 - -
Psa5g1421 386 PRINTS Isopenicillin N synthase signature 289 315 - -
Psa5g1421 386 PANTHER GIBBERELLIN 20 OXIDASE 1-B-LIKE 23 382 - -
Psa5g1421 386 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 23 382 - -
Psa5g1421 386 MobiDBLite consensus disorder prediction 1 23 - -
Psa5g1421 386 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 229 329 IPR005123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1421 Psa-Chr5 110317186 110320297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1421 27 367 Glycosyltransferase AT5G59530 28.775 6.61e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1421 K05282 - gmx:100816834 593.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1421 5 110317186 110320297 Psa5g1421 5 110317186 110320297 ECH