Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01074 ATGGATTCGGGCCACGTGGGCAGTAATTTCATTTGGCCAGAGGAGTACTTGGTGGAGGCAGAAGAGGAGCTCGAAGCACCAGTGGTGGACCTTGATGGGTTTCTGAGGGGGGACGATGAGGCCACAGAGCGTGCGGCTAGGCTCGTGAGAGAAGCTTGCATCAACCATGGCTTCTTCCAAGTCATCAACCATGCTGTTCATCCATCCCTCATTCGTCAAGCACATCATCATATGGACTCTTTCTTTAAGCTCCCCATTCACCGCAAATTGACTCTCCTTAAGCCCCCCGCTTCCATGTGGGGCTACTCCGGTGCACATTCTCATCGCTTCTCCTCCAACTTGCCATGGAAGGAAACCCTCTCTTTCCCCTACCATAACAACTCCTCTCACCCCGTTGTAACAACCTACTTTAAATCCAACGTAGGCCAAGACTTTGAACAAGCCGGAGTGACCATGGAGAAGTACTGTGGGAGTATGAAGCGTTTGGGGATGAAACTGACGGAGCTATTGGCAATAAGCTTAGGGGTGGATAGGTTGCATTACAAGGAGTTGTTTGAAGAAGGGTGGTCCATCATGAGATGCAACAATTACCCATCTTGTGAAGAACCAAGGCTTACGCTAGGGACAGGACCCCATTGTGATCCAACTTCTATCACAATTCTTCACCAAGATCATGTTGGAGGCCTTCATGTCTTTGCGGACAACAAATGGAAGACGGTACCACCTCGTCTTGATGCCCTTGTTGTCAACATTGGAGACACCTTCACGGCATTATCGAACGGGAGATACAAAAGTTGCCTTCATAGGGCAGTGGTGAACAAGTACAAGGAGAGAAAGTCATTGGCATTCTTTCTATGCCCCAAAGAAGACAAGTTGGTGAGTGCCCCCGATGATATTGTTCGCTTGGATGGGACGAAACAGTATCCCGATTTTACATGGTCACATTTTCTTCTATTCACGCAAAAGTACTACAGAGCAGACGAAGCTACACTGCCAAACTTCATCAAGTGGTTGCAATCCTCCAAAACCACTATCTAG 1038 0.4836 MDSGHVGSNFIWPEEYLVEAEEELEAPVVDLDGFLRGDDEATERAARLVREACINHGFFQVINHAVHPSLIRQAHHHMDSFFKLPIHRKLTLLKPPASMWGYSGAHSHRFSSNLPWKETLSFPYHNNSSHPVVTTYFKSNVGQDFEQAGVTMEKYCGSMKRLGMKLTELLAISLGVDRLHYKELFEEGWSIMRCNNYPSCEEPRLTLGTGPHCDPTSITILHQDHVGGLHVFADNKWKTVPPRLDALVVNIGDTFTALSNGRYKSCLHRAVVNKYKERKSLAFFLCPKEDKLVSAPDDIVRLDGTKQYPDFTWSHFLLFTQKYYRADEATLPNFIKWLQSSKTTI 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01074 345 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 4 341 - -
Cca03g01074 345 Pfam 2OG-Fe(II) oxygenase superfamily 192 287 IPR044861 -
Cca03g01074 345 PANTHER GIBBERELLIN 20-OXIDASE 4 341 - -
Cca03g01074 345 Pfam non-haem dioxygenase in morphine synthesis N-terminal 27 136 IPR026992 -
Cca03g01074 345 SUPERFAMILY Clavaminate synthase-like 6 326 - -
Cca03g01074 345 Gene3D - 2 319 IPR027443 -
Cca03g01074 345 PRINTS Isopenicillin N synthase signature 49 66 - -
Cca03g01074 345 PRINTS Isopenicillin N synthase signature 212 233 - -
Cca03g01074 345 PRINTS Isopenicillin N synthase signature 247 273 - -
Cca03g01074 345 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 188 287 IPR005123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01074 Cca-Chr3 26101730 26108746 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01074 23 316 Glycosyltransferase AT5G59530 27.907 2.80e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01074 K05282 - gmx:100776707 578.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01074 03 26101730 26108746 Cca03g01074 03 26101730 26108746 ECH