Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2937 ATGGATTCATCAGGTCTCTTGCGGTCTGAACTTGAGGTTCTGCCCCACGTGCCCACGAATTTCATTTGGCCAGAGGAGAACCTGGCGGATGCCCAAGACGAGCTCCAAGCGCCAGTGGTGGACCTTGATGGGTTTCTCAGAGGGGACGATGAGGCCACACAACATGCTGCTAAGCTCGTTAGTGAAGCTTGCTTGAACCATGGCTTTTTCCAAGTGATCAACCATGGGGTTGATCCACACCTCATTCGTGAAGCACATGATCAAATGGGCATTTTCTTTAAGCTCCCAATTCACAGGAAATTGAGTGTTCATAAGACACCCGGTTCCATGTGGGGCTATTCTGGTGCACATGCTCATCGCTTCTCCTCCAAATTGCCATGGAAGGAAACCCTCTCTTTCCCCTACAATGACGACACCTTGGAGCCTGTTGTAACAAACTACTTTAAATCCACCATGGGAGAAGACTTTGAACAAGCCGGAGTGACATTCCAGAAGTACTGTGGAGCTATGAAGCAGTTGGGACTGAAACTGACGGAGCTATTGGCAATAAGCTTAGGCGTGGATCGGTTGCATTACAGGGACTTGTTTGAAGATGGGTGCTCCATCATGAGATGCAACAATTACCCATCTTGTCAACAACCGAGCCTTACACTCGGGACAGGACCACATTGTGATCCAACATCTATAACCATACTTCACCAAGACCATGTTGGAGGGCTTCATGTATTTGCGGACAACAAGTGGCAGACGGTTCCACCTCGTCTTGATGCCCTTGTAGTGAACATAGGAGACACCTTCACGGCATTATCAAATGGGAGATACAAAAGTTGCCTTCATAGGGCAGTAGTTAACAAGTACAAGGAGAGAAAGTCCTTGGCGTTCTTTCTATGCCCCAAAGAAGACAAGGTGGTGAGACCCCCAGAGGATATTGTTCGCATGGATGGGACAAAACAGTATCCCGATTTTACATGGTCAGATTTGCTTCAATTCACACAAAAGTGCTACAGAGCAGACGAAGATACACTGCCAAacttcatcaagtggttgctaTCCTCCAAAACCACAAACTAG 1071 0.4678 MDSSGLLRSELEVLPHVPTNFIWPEENLADAQDELQAPVVDLDGFLRGDDEATQHAAKLVSEACLNHGFFQVINHGVDPHLIREAHDQMGIFFKLPIHRKLSVHKTPGSMWGYSGAHAHRFSSKLPWKETLSFPYNDDTLEPVVTNYFKSTMGEDFEQAGVTFQKYCGAMKQLGLKLTELLAISLGVDRLHYRDLFEDGCSIMRCNNYPSCQQPSLTLGTGPHCDPTSITILHQDHVGGLHVFADNKWQTVPPRLDALVVNIGDTFTALSNGRYKSCLHRAVVNKYKERKSLAFFLCPKEDKVVRPPEDIVRMDGTKQYPDFTWSDLLQFTQKCYRADEDTLPNFIKWLLSSKTTN 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2937 356 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 198 298 IPR005123 -
Ssu1g2937 356 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 10 352 - -
Ssu1g2937 356 SUPERFAMILY Clavaminate synthase-like 14 337 - -
Ssu1g2937 356 PANTHER GIBBERELLIN 20-OXIDASE 10 352 - -
Ssu1g2937 356 Gene3D - 5 336 IPR027443 -
Ssu1g2937 356 Pfam 2OG-Fe(II) oxygenase superfamily 202 298 IPR044861 -
Ssu1g2937 356 Pfam non-haem dioxygenase in morphine synthesis N-terminal 38 138 IPR026992 -
Ssu1g2937 356 PRINTS Isopenicillin N synthase signature 60 77 - -
Ssu1g2937 356 PRINTS Isopenicillin N synthase signature 258 284 - -
Ssu1g2937 356 PRINTS Isopenicillin N synthase signature 223 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2937 Ssu-Chr1 77231576 77239179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2937 5 323 Glycosyltransferase AT5G59530 28.571 3.01e-30 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2937 K05282 - gmx:100776707 670.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2937 1 77231576 77239179 Ssu1g2937 1 77231576 77239179 ECH