Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3170 ATGAACTCAACCACTTCAACTCTTGTACTATACTCTGAATCAAGAACAGAGGAACCAAAAAAAGAAAACATGGTTTCTATTTTTGATTCAAACTTACTTCAAAAGCAAGTAAACTTGCCAAAAGAGTTCATTTGGCCATCTAAAGACTTAGTTAACACAACCCAAGAAGAGCTTAAAGAACCTCTCATAGACTTAAGTATCATGAAAAGTGGTGATGAAGAAGCTATTGCAAGTGCTGCTGAACTTGTGAGAAAAGCATGTTTGAAACATGGTTTTTTTCAAGTAATTAATCATGGTGTGGATCAAGATCTTATTCATGATGCTTATTGTGAAACTGATTCCATTTTTAAGTTACCTTTAAGCAAGAAGCTAAGTGCTAAGAGGGTGTATGGTGGAGTTTCTGGCTACTCAGGTGCTCATGCAGATAGATACTCATCTAAATTGCCATGGAAAGAGACATTTTCTTTTGTTTACAATCATCAAAACAGTTCCAACACACAGATTGTTGATTACTTTGAATCTGTCTTAGGAGAAGACTTTCAAGATGCAGGATGGGTGTATCAAAAGTACTGTGAAGCAATGAAGGAATTATCCCTAACAATTATGGAACTCTTGGCTATTAGTTTGGGGATAGATCGTTCTCATTATAGAAGATTTTTTGAGGATGGTGACTCAATAATGAGGTGCAACTACTATCCACCATGCAATAGTTCTAGTGTCACCCTTGGTACTGGCCCTCATTCTGACCCAACATCATTAACCATTCTTCATCAAGATCAAGTTGGAGGTTTAGAAGTTTTTGCAGATAATAAATGGATGGCTGTTCGCCCTAGACATGAAGCCTTAGTCATAAACATTGGTGACACTTTTATGGCATTATCAAATGGGAGATACAAGAGTTGCCTTCACAGAGCATTAGTGAACAAATACATAGAAAGAAGGTCATTGGTTTTCTTTGTGTGTCCTAGAAAAGACAAGGTGGTGAGACCACCTCAAAATTTGCTAGCAAAAAATGAAGCAAGAGAGTACCCTGATTTCACTTGGTCAAGTTTGTTTGAATTCACACAGAAACACTACAGGGCTGATGTTGCTACCCTCCAAAGCTTCTTTCAGTGGCATTCCTCTTCCAACTTTTAG 1137 0.3747 MNSTTSTLVLYSESRTEEPKKENMVSIFDSNLLQKQVNLPKEFIWPSKDLVNTTQEELKEPLIDLSIMKSGDEEAIASAAELVRKACLKHGFFQVINHGVDQDLIHDAYCETDSIFKLPLSKKLSAKRVYGGVSGYSGAHADRYSSKLPWKETFSFVYNHQNSSNTQIVDYFESVLGEDFQDAGWVYQKYCEAMKELSLTIMELLAISLGIDRSHYRRFFEDGDSIMRCNYYPPCNSSSVTLGTGPHSDPTSLTILHQDQVGGLEVFADNKWMAVRPRHEALVINIGDTFMALSNGRYKSCLHRALVNKYIERRSLVFFVCPRKDKVVRPPQNLLAKNEAREYPDFTWSSLFEFTQKHYRADVATLQSFFQWHSSSNF* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3170 378 Pfam 2OG-Fe(II) oxygenase superfamily 224 322 IPR044861 -
Tpr3g3170 378 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 18 375 - -
Tpr3g3170 378 Pfam non-haem dioxygenase in morphine synthesis N-terminal 61 164 IPR026992 -
Tpr3g3170 378 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 222 322 IPR005123 -
Tpr3g3170 378 Gene3D - 20 354 IPR027443 -
Tpr3g3170 378 PANTHER GIBBERELLIN 20 OXIDASE 1-B-LIKE 18 375 - -
Tpr3g3170 378 SUPERFAMILY Clavaminate synthase-like 33 361 - -
Tpr3g3170 378 PRINTS Isopenicillin N synthase signature 83 100 - -
Tpr3g3170 378 PRINTS Isopenicillin N synthase signature 247 268 - -
Tpr3g3170 378 PRINTS Isopenicillin N synthase signature 282 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3170 Tpr-Chr3 34926230 34930962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3170 11 360 Glycosyltransferase AT5G59530 27.072 1.20e-30 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3170 K05282 - gmx:100816834 613.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3170 3 34926230 34930962 Tpr3g3170 3 34926230 34930962 ECH