Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0438 ATGGATTCAGGTATCTTGTTGTCAGCATTGAATCACAACATTGAACTCCCTAAAGTTCCTACCAATTTCATTTGGCCAAAGGAGTACCTAGTTGAAGCCCATGAAGAGCTTCAAGCACCAATGGTTGACCTAAATGGGTTCCTCAAAGGGGATGATAATGCCACAAACTATGCTTCTAAGATCATAGGTCAAGCTTGTTTGAACCATGGGTTCTTTCAAGTGATCAACCATGGTGTTGATTCTTACCTCATTAAGGAAGCTTATGATCATATGGACACTTTCTTTAAGCTTCCAATTCAGAAGAAAGTGAGTTTTTCTAAGAAACCTGGTTCTTTATGGGGCTATTCTGGTGCACATGTTGATAGGTTCTCATCTAAGTTGCCATGGAAGGAAACCCTTTCTTTCCCTTACTATGATAACACCTCAGAGTCTGTTGTTACAAACTACTTTAACTCCACCTTGGGGGAAGATTTTGTGCAAGCTGGAGTGACATTCCAAAAGTATTGCAAAGCTATGAAGGAGTTAGGGGTAAAGCTGACAGAGCTTTTGGCAATAAGCTTAGGTATTGGTAGGTTTCATTACAAGAACTTATTTGAAGAAGGATGTTCTATCATGAGATGCAACTATTACCCATGTTGCCAACAACCAAACCTTGTACTTGGAACAGGACCACATTGTGACCCAACATCTATAACCATTCTTCATCAGGATCATGTTGGAGGACTTGATGTTTTTTCAGACAACAAGTGGCAAACTGTTCAACCTCATCCTCATGCCCTTGTAGTTAACATTGGTGATACCTTCACGGCCTTATCAAATGGAAGATATAAGAGTTGTCTGCATAGGGCAGTGGTTAACAAGTTTAAGGAGAGGAGATCCATGGCATTTTTTCTATGCCCTAAAGAAGACAAGGTGGTGAGACCCCCAGAGGAAATTGTCCTCAAAGATGGGACCAACAAGTACCCTGATTTTACATGGTCTCATTTGCTTGAATTCACACAAAAACATTATAGAGCAGATGAAGCTACACTGCCAAACTTCACTAACTGGTTGTTATCCTCCAAACCATAA 1071 0.4043 MDSGILLSALNHNIELPKVPTNFIWPKEYLVEAHEELQAPMVDLNGFLKGDDNATNYASKIIGQACLNHGFFQVINHGVDSYLIKEAYDHMDTFFKLPIQKKVSFSKKPGSLWGYSGAHVDRFSSKLPWKETLSFPYYDNTSESVVTNYFNSTLGEDFVQAGVTFQKYCKAMKELGVKLTELLAISLGIGRFHYKNLFEEGCSIMRCNYYPCCQQPNLVLGTGPHCDPTSITILHQDHVGGLDVFSDNKWQTVQPHPHALVVNIGDTFTALSNGRYKSCLHRAVVNKFKERRSMAFFLCPKEDKVVRPPEEIVLKDGTNKYPDFTWSHLLEFTQKHYRADEATLPNFTNWLLSSKP 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0438 356 SUPERFAMILY Clavaminate synthase-like 15 339 - -
Lal4g0438 356 Pfam 2OG-Fe(II) oxygenase superfamily 203 300 IPR044861 -
Lal4g0438 356 Pfam non-haem dioxygenase in morphine synthesis N-terminal 40 142 IPR026992 -
Lal4g0438 356 Gene3D - 7 332 IPR027443 -
Lal4g0438 356 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 12 353 - -
Lal4g0438 356 PANTHER GIBBERELLIN 20-OXIDASE 12 353 - -
Lal4g0438 356 PRINTS Isopenicillin N synthase signature 62 79 - -
Lal4g0438 356 PRINTS Isopenicillin N synthase signature 225 246 - -
Lal4g0438 356 PRINTS Isopenicillin N synthase signature 260 286 - -
Lal4g0438 356 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 198 300 IPR005123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0438 Lal-Chr4 3066099 3068848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0438 13 338 Glycosyltransferase AT5G59530 29.204 1.59e-31 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0438 K05282 - gmx:100776707 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0438 4 3066099 3068848 Lal4g0438 4 3066099 3068848 ECH