Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4968 ATGGATTCAGGTGTGTTTTCTGAACTACTCCATGTGCCACTGCCAACGAGTTTCATTTGGCCAAAGGAGTACATGGAGGACGCACACGAAGAGCTCCAAGTACCAATGGTGGACCTTAGTGGGTTTCTCAGAGGGGACCATGAAGCCACGCAACATGCTGCGATGCTCATAAACGGAGCTTGCTTGAATCATGGCTTCTTCCAAGTGATCAACCACGGAGTTGATCCGTGCCTCATTGGTGAAGCTTATGATCAGATGGACAAGTTCTTTAAGCTCCCCATTCACCAGAAAGTGAGCGTTTATAAAACACCTGGTTCCATGTGGGGATATTCCGGTGCGCACGCTGATCGCTTCTCCTCAAAATTGCCATGGAAGGAGACATTGTCTTTCCCCTACCATGAACACACTTCAGAGCATGTTGTCACGAACTACTTTAACTCAACCTTAGGGGAAGATTTTGAACAAGCTGGGGTGACATTCCAGAAATACTGCAAAGCTATGAAACATTTGGGAATGAAGCTGACAGAACTATTGGCAATAAGCTTAGGAGTGGATCGGTTGCATTACAAGGAGTTGTTTGAAGAAGGATGCAATATCATGAGATGCAACTATTACCCATCTTGCCAGCAACCGAGCCTTGCACTCGGAACCGGACCGCATTGTGACCCGACCGCCATAACCATACTTCACCAAGATCAAGTTGGAGGGCTTGATGTGTTTGCAGACAACAAATGGCAGACGGTTCGGCCTTATCCCAACGCCCTTGTCATTAACATTGGAGATACCTTCACGGCCTTATCGAATGGGAGATACAAGAGTTGCCTCCACAGGGCAGTAGTTAACCCGTATAAAGAGAGGAGATCCATGACATTCTTTGTATGCCCAAAAGATGATAAGGTAGTGAAAGCCCCCGAGGAGATTGTTCACAAAGATGGGAAGAAACAATATCCCAATTTTACATGGTCGGATTTGCTAGAATTCACACAAAAGCACTATAGAGCAGACGAGGCTACACTGCCAAACTTCACCAAATGGTTGATATCCTCCGAACCCCATGCCTAA 1062 0.4642 MDSGVFSELLHVPLPTSFIWPKEYMEDAHEELQVPMVDLSGFLRGDHEATQHAAMLINGACLNHGFFQVINHGVDPCLIGEAYDQMDKFFKLPIHQKVSVYKTPGSMWGYSGAHADRFSSKLPWKETLSFPYHEHTSEHVVTNYFNSTLGEDFEQAGVTFQKYCKAMKHLGMKLTELLAISLGVDRLHYKELFEEGCNIMRCNYYPSCQQPSLALGTGPHCDPTAITILHQDQVGGLDVFADNKWQTVRPYPNALVINIGDTFTALSNGRYKSCLHRAVVNPYKERRSMTFFVCPKDDKVVKAPEEIVHKDGKKQYPNFTWSDLLEFTQKHYRADEATLPNFTKWLISSEPHA* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4968 353 Pfam 2OG-Fe(II) oxygenase superfamily 198 295 IPR044861 -
Lja1g4968 353 PANTHER GIBBERELLIN 20-OXIDASE 8 349 - -
Lja1g4968 353 Pfam non-haem dioxygenase in morphine synthesis N-terminal 34 137 IPR026992 -
Lja1g4968 353 PRINTS Isopenicillin N synthase signature 57 74 - -
Lja1g4968 353 PRINTS Isopenicillin N synthase signature 220 241 - -
Lja1g4968 353 PRINTS Isopenicillin N synthase signature 255 281 - -
Lja1g4968 353 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 196 295 IPR005123 -
Lja1g4968 353 SUPERFAMILY Clavaminate synthase-like 14 334 - -
Lja1g4968 353 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 8 349 - -
Lja1g4968 353 Gene3D - 7 334 IPR027443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4968 Lja-Chr1 69296633 69300155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4968 14 333 Glycosyltransferase AT5G59530 28.571 4.05e-31 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4968 K05282 - gmx:100776707 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4968 1 69296633 69300155 Lja1g4968 1 69296633 69300155 ECH