Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0216 ATGGATTTGGGTGCTTCTACGCTCCTGTGCCCTCCATTGGAGCTCACAGATAAGAAAGAACATGGGGTTTCTCCATCTGACTCATCTTTTTTTAAAAAACAACCCAACATTCCTATGGAATTCATTTGGGCAAAAGGGGAAGTGGGTCATGCTCATGAAGAGCTCAGAGAGCCGGTGGTGGATCTTGAGGGGTTCTTTTCAGGTGATGAGGTGGCTACACAGCATGCTGCCATGCTTGTTAGGTCAGCTTGCTTGAACCACGGCTTCTTCCAAGTGATCAACCATCGGGTCGATCCACACCTCATTACTGTTGCACATGACCATATGGAGGCATTTTTTAAGCTGCCATGGTCCAAGAAACTGAGGGCTCAGAGGAAACCTGGTAGTCTATGGGGTTATTCGGGTGCCCACGCTGATCGTTTTTCATTGAAATTGCCATGGAAGGAAACCTTATCTTTTGGTTTCCATGAGAATGGCTCTGAATCTGTTGTGGAAGATTTCTTCAAGTCCACCTTAGGGGAAGAATTTGAGCAGACAGGATTAGTCTATCAAAAATATTGTCAAGCGATGAAGGACTTATCCCTCGTCCTGATGGAACTTTTAGCCATCAGCTTGGGAGTAGATCGCTTACATTATAGAAAATTCTTCGAAGATGGTAGTTCTATAATGAGATGCAACTACTATCCACCTTGCCAAGAGCCAGGCCTCGCCTTTGGCACAGGACCACATTGTGATCCAACCTCCCTGACCATTCTCCATCAGGATCAAGTTGGAGGCCTTGAAGTCTATGTGAACAACAAATGGAGGACCATCCGCCCTCGATGCGATGCCCTAGTTATCAATCTTGGTGACACATTTAAGGCACTATCTAATGGAAGATACAAGAGTTGCCTTCACAGGGCTGTGGTGAACAGGTACAAGGAGAGGAGATCACTGGTGTTCTTCGTGTGCCCTAGAGAGAACAAGGTGGTGACTCCCCCACAGGATCTTGTTTGCAGAGAAGGGACAAGGAAGTACCCGGATTTCAAATGGTCAGATTTGCTTGAATTCACACAAAAGTACTACAGAGCTGACGATGCTACCCTCCAAAACTTTACCAAATGGCTTCTATCCTCCAATCCTCCTAACCACCACTAG 1137 0.4626 MDLGASTLLCPPLELTDKKEHGVSPSDSSFFKKQPNIPMEFIWAKGEVGHAHEELREPVVDLEGFFSGDEVATQHAAMLVRSACLNHGFFQVINHRVDPHLITVAHDHMEAFFKLPWSKKLRAQRKPGSLWGYSGAHADRFSLKLPWKETLSFGFHENGSESVVEDFFKSTLGEEFEQTGLVYQKYCQAMKDLSLVLMELLAISLGVDRLHYRKFFEDGSSIMRCNYYPPCQEPGLAFGTGPHCDPTSLTILHQDQVGGLEVYVNNKWRTIRPRCDALVINLGDTFKALSNGRYKSCLHRAVVNRYKERRSLVFFVCPRENKVVTPPQDLVCREGTRKYPDFKWSDLLEFTQKYYRADDATLQNFTKWLLSSNPPNHH* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0216 378 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 219 318 IPR005123 -
Vvi18g0216 378 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 58 348 - -
Vvi18g0216 378 PRINTS Isopenicillin N synthase signature 243 264 - -
Vvi18g0216 378 PRINTS Isopenicillin N synthase signature 80 97 - -
Vvi18g0216 378 PRINTS Isopenicillin N synthase signature 278 304 - -
Vvi18g0216 378 FunFam Gibberellin 20 oxidase 2 28 356 - -
Vvi18g0216 378 Gene3D - 30 356 IPR027443 -
Vvi18g0216 378 SUPERFAMILY Clavaminate synthase-like 30 357 - -
Vvi18g0216 378 Pfam 2OG-Fe(II) oxygenase superfamily 221 318 IPR044861 -
Vvi18g0216 378 Pfam non-haem dioxygenase in morphine synthesis N-terminal 58 158 IPR026992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0216 Vvi-Chr18 1983110 1985445 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0216 54 365 Glycosyltransferase AT5G59530 28.182 8.14e-29 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0216 K05282 - vvi:100267658 795.808