Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0552 ATGGACTCAAGCTTATTCTTTGATCCATCGTTGCTAAAGAGTCAACCCACTGTGCCCTTGAATTTTGTTTGGCCAAAGGAGTGTTTAGAAGATTCCCATGAAGAGCTCCAAGCTCCAGTTTTGGACCTTGATGGGTTCCTAAGAGGTGACAATGAGGCCACACTTCACACTGCAAATCTCATACGCAAATCTTGTTTAAGCCATGGCTTCTTCCAAGTTATTAACCATGGAGTTGATTCAGCCCTAATTCGAGAAGCATATGATCAAATGGATGCTTTTTTCAACCTTCCAATTCATAGGAAATTGAATGCTCTCAAGACTCAAGGTTCTTTGTGGGGCTATTCTGGTGCCCATGCTGACCGGTTCGCTTCCAAATTGCCATGGAAGGAGACCCTCTCTTTTCCATTCCATGACAATAGCTTGGACCCTGTTGTCACCAATTACTTTCATTCCACATTAGGGGAAGATTTTCAACAAGCTGGAGTGGTATTCCAGAAGTACTGTGAAGCAATGAAGGGGTTAGCATTGAAAGTGGTAGAGCTATTAGCTATAAGCTTGGGTGTGGATAGGTTGCATTATAAGGACTTATTTGAAGAAGGGTGTTCCATCATGAGATGCAATTATTACCCATCATGCCAGCAACCAAGTCTTGCATTAGGGACAGGACCTCATTGTGATCCAACTTCTGTCACCATTCTTCACCAAGATGATGTTGGAGGGCTTGATGTCTTTGTAGATAAGAAATGGCAGACCGTGAAACCTCGTCCTAACGCACTCGTTGTTAACATTGGTGATACCTTCACGGCACTATCAAATGGGAGATACAAGAGTTGTCTACATAGGGCAATGGTTAATGAATACAAGGATAGGAGGTCCTTGGCATTCTTTCTGTGCCCAAAAGAAGACAAAGTGGTGAGAGCCCCAAAGGATATTGTTCTTAAGGATGGGACAAAACAGTATCCAGATTTCACATGGTCTAATTTGCTTGAATTCACACAAAAGTATTATAGAGCTGATGAAGATACCCTACCAAACTTCACCAAGTGGTTGATATCTTCCAAACCATAA 1068 0.4232 MDSSLFFDPSLLKSQPTVPLNFVWPKECLEDSHEELQAPVLDLDGFLRGDNEATLHTANLIRKSCLSHGFFQVINHGVDSALIREAYDQMDAFFNLPIHRKLNALKTQGSLWGYSGAHADRFASKLPWKETLSFPFHDNSLDPVVTNYFHSTLGEDFQQAGVVFQKYCEAMKGLALKVVELLAISLGVDRLHYKDLFEEGCSIMRCNYYPSCQQPSLALGTGPHCDPTSVTILHQDDVGGLDVFVDKKWQTVKPRPNALVVNIGDTFTALSNGRYKSCLHRAMVNEYKDRRSLAFFLCPKEDKVVRAPKDIVLKDGTKQYPDFTWSNLLEFTQKYYRADEDTLPNFTKWLISSKP 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0552 355 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 197 299 IPR005123 -
Lal6g0552 355 PRINTS Isopenicillin N synthase signature 61 78 - -
Lal6g0552 355 PRINTS Isopenicillin N synthase signature 224 245 - -
Lal6g0552 355 PRINTS Isopenicillin N synthase signature 259 285 - -
Lal6g0552 355 PANTHER GIBBERELLIN 20-OXIDASE 6 352 - -
Lal6g0552 355 Gene3D - 11 331 IPR027443 -
Lal6g0552 355 SUPERFAMILY Clavaminate synthase-like 12 338 - -
Lal6g0552 355 Pfam non-haem dioxygenase in morphine synthesis N-terminal 39 139 IPR026992 -
Lal6g0552 355 Pfam 2OG-Fe(II) oxygenase superfamily 202 299 IPR044861 -
Lal6g0552 355 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 6 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0552 Lal-Chr6 3560329 3563373 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0552 18 351 Glycosyltransferase AT5G59530 27.826 6.03e-33 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0552 K05282 - gmx:100801187 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0552 6 3560329 3563373 Lal6g0552 6 3560329 3563373 ECH