Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1310 ATGCTTGGCCTACAACCACAGACCACCACCCCTCAGCCACCACCACCCCCACAACATGATTTCAATGTTCCTCGCAAACCCACTAACCTCTCCTTTCAAAGCCCAAACTCCACTCCCCAATCCATGCATCTTTCTACAGCAGCCCACCACACCCATCTTTCACTACTTGATAAACAAATTGATTCAAGCACTTACGCTTCACTTCTTGAATCTTGCAGAACCCTTAACCTAGGAAAACAAGTTCATGCCCACACCCTCAAAACTGGGTTTCATGGTCATGAGTTTGTTGAAACCAAATTGCTACAAATGTACGGGAGATTTGGTTGTTTGGATGATGCAAACTTGGTGTTTGTAAAAATGCCCCAAAGAAACTTGTACTCTTGGACAGCCATTCTGAGTGTTCATGTAGATCATGGTTACTTTGAGGAAGCTCTTTCACTCTTTGAAAAGCTGCAGCTTGATGATATTGGGTTGGAGTTTTTCGTGTTTCCCGTCGTGTTGAAGTTATGCGGTGGGCTCCGAGTATTGGAACTGGGAAGGCAGTTGCATGGGGTGGTGATCAAGTATCAACATGTTTCGAATATTTATGTGGGAAATGCTCTGATAGATATGTATGGTAAATGTGGAAGCTTAGATGATGCGAAGAAGGTTTTAGCATCGATGAGAGAGATTGATCGGGTTTCGTGGAACTCCATTGTTACCGCTTGTGCTGCCAATGGCAAGGTGTATGAGGCTTTGGGGCTTCTGGAAAGAATGTCTTGTTCTGAAAATTCAAAGCCAAATCTTGTTTCTTGGAGTGCAGTTATAGGTGGGTTCGCACAGAATGGCTACGACAAGGAAGCTCTTGAGCTGCTGTGCAGAATGCAAGCAGCAGGGTTTGAACCAAATGCCCGAACCCTAGCTAGTGTTCTTCCTGCCTGTGCCAGATTACAAAACCTAAACCTTGGCAAGGAAATCCATGGCTACGTCACGAGACACGGGTTCATGTCCAACCCTTTCGTTGTGAATGGATTGGTAGATGTGTATAGGAGGTGCGCTGATATGGGAAGCGCTCTCAAGATCTTTTCAGGGTTTTCGGTGAAAAATGTGGTTTCGTATAATACAATGATAGTAGGGTACTGTGAGAATGGTAATGTGGAAAAGGCCAAGGAGTTGTTTGATCAGATGGAGCTGGTGGGGAAGGATACAATTTCATGGAACTCGATGATTTCAGGATATGCTGACAACTTACTGTTTGATGAAGCTTTGAGCATGTTCCGGGATTTGCTGATGGAAGAAGGGATTGAAGCTGATTCTTTTACCCTAGGGAGTGTTCTTGCTGCTTGTGCAGATATGGCTTCTTTGAGACGAGGGAAGGAGGTACATGCTCAAGCCGTTGTTAGAGGTCTGCATTGGAATACCTTTGTGGGTGGAGCTTTGGTTGAAATGTACAGCAAATGTGAAGATTTGAAGGCTGCTCAGTTGGCTTTTGATGGAGTAACGGAAAGGGATACTGCTACATGGAACGTGTTGATCTCTGGCTATGCCTGCTGCAATCAGCTTGAGAACATTCAGAATCTTATTCAGAAGATGAAAGGAGATGGTTTTGAGCCAAATGTATATACCTGGAATGGAATTATTTCGGGTCATGTGGAGAACGGCCACAATGAGCTTGCTCTGAGATTATTCACTGAGATGCAGACTTCAAGTCTGAGGCCTGATATATACACAGTTGGAATAATTTTACCTGCCTGCGCAAGGTTGGCGACCATTGCACGAGGCAAGCAGGTTCATGCACATTCAATAAGACAAGGATATGAGTTGGATGTTCACATTGGAGCAGCTCTAGTGGACATGTATGCAAAATGCGGAAGCATAAAGCATGCAATGCAGGTCTATAACAGGATCTCAAACCCTAATTTGGTGTCTCAAAACGCCATGCTTACTGCATATGCAATGCATGGACATGGGGATGAAGGAATTGCCCTATTTCGTAACATGCTGGGAAATGGCTTTAGACCTGACCATGTGACTTTCCTATCAGTTCTTTCTTCATGTGTGCACGCTGGGGCAGTTGAGACTGGCCATGAGTTCTTTGATCTGATGACGTATTATAATGTGACACCAAGTTTAAAACACTACACATGTATCGTTGATCTCCTAAGTCGAGCAGGAAGGCTAGACGAAGCTTATGAGCTCGTTAAGAAAATACCAAGGAAGCCTGATTCAGTTATGTGGGGTGCCCTACTTGGGGGATGTGTTATTTGGGGTAACGTTGAGTTGGGAGAAATTGCAGCAGAAAGTCTCATAGAGTTGGAACCAAATAATACTGGAAACTATGTTCTGCTGGCAAACTTGTATGCTTATGCAGGGAGGTGGCATGACCTAGATAGAACAAGGCAGATGATTAAGGATAGGGGAATGCACAAGAGCCCAGGATGCAGTTGGATTGAAGATAGAGAAGATATTCATGTGTTTCTTTCCTGTGACAAATCTCATGAGAAAACAGAGGATATTTATACAACTCTAGATAATTTGAACACTCACATGAGAACAGGGTTAGAACACGTATATAATTGTAAGAATATAGCATGA 2574 0.4382 MLGLQPQTTTPQPPPPPQHDFNVPRKPTNLSFQSPNSTPQSMHLSTAAHHTHLSLLDKQIDSSTYASLLESCRTLNLGKQVHAHTLKTGFHGHEFVETKLLQMYGRFGCLDDANLVFVKMPQRNLYSWTAILSVHVDHGYFEEALSLFEKLQLDDIGLEFFVFPVVLKLCGGLRVLELGRQLHGVVIKYQHVSNIYVGNALIDMYGKCGSLDDAKKVLASMREIDRVSWNSIVTACAANGKVYEALGLLERMSCSENSKPNLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLNLGKEIHGYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVEKAKELFDQMELVGKDTISWNSMISGYADNLLFDEALSMFRDLLMEEGIEADSFTLGSVLAACADMASLRRGKEVHAQAVVRGLHWNTFVGGALVEMYSKCEDLKAAQLAFDGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLMTYYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLGGCVIWGNVELGEIAAESLIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQMIKDRGMHKSPGCSWIEDREDIHVFLSCDKSHEKTEDIYTTLDNLNTHMRTGLEHVYNCKNIA* 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1310 857 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 686 842 - -
Vvi16g1310 857 Gene3D Tetratricopeptide repeat domain 319 460 IPR011990 GO:0005515
Vvi16g1310 857 Gene3D Tetratricopeptide repeat domain 588 683 IPR011990 GO:0005515
Vvi16g1310 857 FunFam Pentatricopeptide repeat-containing protein At4g01030, mitochondrial 188 316 - -
Vvi16g1310 857 Pfam PPR repeat 126 153 IPR002885 -
Vvi16g1310 857 Pfam PPR repeat 100 124 IPR002885 -
Vvi16g1310 857 Pfam PPR repeat 500 529 IPR002885 -
Vvi16g1310 857 Pfam PPR repeat 397 423 IPR002885 -
Vvi16g1310 857 Pfam PPR repeat 706 732 IPR002885 -
Vvi16g1310 857 Pfam PPR repeat 227 253 IPR002885 -
Vvi16g1310 857 Pfam PPR repeat 199 223 IPR002885 -
Vvi16g1310 857 FunFam Pentatricopeptide repeat-containing protein At1g20230 464 587 - -
Vvi16g1310 857 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
Vvi16g1310 857 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Vvi16g1310 857 MobiDBLite consensus disorder prediction 8 22 - -
Vvi16g1310 857 Pfam PPR repeat 362 390 IPR002885 -
Vvi16g1310 857 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 124 158 IPR002885 -
Vvi16g1310 857 Pfam E motif 750 811 IPR046848 -
Vvi16g1310 857 Gene3D Tetratricopeptide repeat domain 188 318 IPR011990 GO:0005515
Vvi16g1310 857 Gene3D Tetratricopeptide repeat domain 46 182 IPR011990 GO:0005515
Vvi16g1310 857 NCBIfam pentatricopeptide repeat 227 261 IPR002885 -
Vvi16g1310 857 NCBIfam pentatricopeptide repeat 534 568 IPR002885 -
Vvi16g1310 857 NCBIfam pentatricopeptide repeat 199 223 IPR002885 -
Vvi16g1310 857 NCBIfam pentatricopeptide repeat 364 390 IPR002885 -
Vvi16g1310 857 NCBIfam pentatricopeptide repeat 263 297 IPR002885 -
Vvi16g1310 857 NCBIfam pentatricopeptide repeat 397 431 IPR002885 -
Vvi16g1310 857 NCBIfam pentatricopeptide repeat 635 668 IPR002885 -
Vvi16g1310 857 Gene3D Tetratricopeptide repeat domain 490 587 IPR011990 GO:0005515
Vvi16g1310 857 Gene3D Tetratricopeptide repeat domain 684 842 IPR011990 GO:0005515
Vvi16g1310 857 FunFam Pentatricopeptide repeat-containing protein chloroplastic 588 685 - -
Vvi16g1310 857 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 633 667 IPR002885 -
Vvi16g1310 857 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 532 566 IPR002885 -
Vvi16g1310 857 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 532 850 IPR046960 GO:0003723|GO:0009451
Vvi16g1310 857 FunFam Putative pentatricopeptide repeat-containing protein 324 455 - -
Vvi16g1310 857 Pfam PPR repeat family 531 580 IPR002885 -
Vvi16g1310 857 Pfam PPR repeat family 260 309 IPR002885 -
Vvi16g1310 857 Pfam PPR repeat family 632 680 IPR002885 -
Vvi16g1310 857 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 668 702 IPR002885 -
Vvi16g1310 857 MobiDBLite consensus disorder prediction 1 45 - -
Vvi16g1310 857 MobiDBLite consensus disorder prediction 24 45 - -
Vvi16g1310 857 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 497 531 IPR002885 -
Vvi16g1310 857 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1310 Vvi-Chr16 21629331 21631904 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1310 58 844 Glycoside Hydrolase AT3G49170 29.662 1.35e-126 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1310 - - vvi:100260559 1726.84