Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2723 ATGTCCATGTCCGTTCAGCTATTGGAATCCATGATTCGCCCACCACCTGACCCACTCATATCTCATTCTCATGTTTCATCCAAGCTAACAAACCCACCTTCCTTGTCATTTCAACCCTCAAAATCCATCCATCACCCCATGCCCATTGCTCGTACTCCTAACCACACCCATTTCTTCATACTTGACCAACCTCTGAATTCAAACACTTATGCCGTTATTCTCGATTCTTGTGAGTGCCATAGTTTGGGTAAACAGGTGCACGCCCACTCCATCAAAACTGGGTTTCATGGGTATGAGTTTGTCGATACCAAGTTGCTTCAGATGTATGGGAGAACGGGCTGTTTAGAGGATGCATGTCAGCTGTTCGACATAATGCCTCTTAGAAACTTGTATTCATGGACAGCAATTCTGAGTGTTTATGTTGATCATGGGCTCTTTGAGGAAGCGTTTCTTCTTTTTCAAGAACTGTTGTACCAAGAGGTGCCATTGGATTTTTTTCTGTTCCCTTTGGTGCTAAAGATTTGTCACGGTCTTGGTGCCTTGGAATTAGGTAGGCAAGTGCATGGAATTCTTTTGAAACATCAGTTTGTTTCAAATATATATGTCGGTAATGCTCTTTTAGATATGTATGGTAAATGTGGAAGCTTAGATGATGCTAAGAAAGTTTTAGAAAGCATGCCCAACAAGGATCGTGTTTCGTGGAATTCTATTATCACTGCTTGTGCTGCCAATGGGATGGTACACGAGGCTCTGGATCTTTTACAAAATATGTCTGTGAGTGATGTGACACCCAATCTTGTTTCTTGGAGTGCAGTTATTGCAGGATTTGCACAAAATGGTTATGATGAGGAAGCAATTCAACTTCTCTATAAAATGCAAGTAGCAGGAATGGAACCAAATGCACGGACGCTGGCAAGTGTTATTCCTTCTTGTGCGAGGTTACGAAAACTGAACCTTGGGAAAGAACTGCATAGCTATATTATTAGACATGATTCTATGTCTAATGCTTTTGTCGTCAATGGATTATTGGACATGTATAGAAGGTGTGGCGATATGGACGGTGCCTTCAAAATATTTTCCAGAGTTTCAAGAAAGTGCTCTGCATCTTATAATACAATGATAGCTGGGTATAGTGAAAATGGCAACATCCTTAAGGCTAAGGTATTATTCGATCAGATGGAGCAGGAAGGTGTTGAGAGGGACAGGATATCATGGAATACAATGATTTCAGGATATGTGGACAATTTTCTATTTGATGAAGCATTTAGTATGTTTCAAAATTTACTGAAAAAAGGAATTGCACCTGATTCTTTTACTCTTGGAAGTGTCCTCACTGCCTGCGCTGACATGGCTTCTATTCGACAAGGGAAAGAGATACACACCCAGGCCATTGTCAGAGGTCTGCAATCTAACAGTTTCATAGGTGGAGCTTTCGTAGAGATGTACTTTAAATGTGAGGACATTGAAGCTGCCCGAACAGCTTTCGATGAAGTAAGTGAAAGGGATGTAGCAACTTGGAATGCTTTAATATCTGGCTATGCCCGATGCAACCAAATTGAAAAGATTCAAGAACTTCTCCAGAAGATGACAAAGGATGGTTTTGAGCCCAATGTATACACATGGAATGGTATTTTAGCTGGGTATGTGGAAAATAGCCATTATGATTTAGCAATGCAATTGTTCACTGAAATGCAGAACTCATATTTGAGACCAGACATATACACAGTTGGAATAATTGTAACAGCATGTTCCAAGTTGGCCACAATCCAGCGAGGAAAGCAGGTTCATGCATATTCGATTAGAGCTGGGCATGATTCAGATGTTCATATTGGGGCTGCATTAGTGGACATGTATGCAAAATGTGGGAGTATCAAGTACAGCAAGCTAGCTTATAACAGAATATCAGACCCTGATTTGGTGTCCCACAATGCTATCCTCACTGCATATGCCATGCATGGACATGGGGAGGAAGGAATTTCTCATTTTCGCATAATGTTGGCTGGCAAAGTTAGACCAGATCATGTGACCTTTCTGTCAGTTCTTTCTTTATGTGTTCATGCTGGATCAGTTGAGATGGGTCATGAATGTTTTTATTTGATGGAAACTCACAACTTGACACCAACGTTGAAACATTATACATGTATGGTCGACCTATTGAGTCGTGCAGGCAAACTGAAAGAAGCATATGAAGTTATGAAGAAAATGCCAATGGAAGCTGATCCAGTGATGTGGAGTGCTCTGCTTGGAGGTTGTTTTATTCACGGTGAAGTTGCCTTGGGAGAAATTGCAGCGAAAAATCTCATAGAGTTGGAGCCCAATAACACTGGAAACTATGTTCTGTTGGCGAACTTGTATGTCTCCACAGGGAGATGGTATGATCTCGCTCAAATTAGACAAATGATGAAAGACAGAGGCATGCAGAAGAGTCCAGGATGCAGCTGGATAGAAGACAAAGATGGGATTCATGTGTTTCTCGCAAGTGATAAAACTCACAAAAGAACCGAAGAGATATATTCCACTTTGGATAATTTGActtgttatattaaaaaaatgcatgCATGTAATTAA 2568 0.4058 MSMSVQLLESMIRPPPDPLISHSHVSSKLTNPPSLSFQPSKSIHHPMPIARTPNHTHFFILDQPLNSNTYAVILDSCECHSLGKQVHAHSIKTGFHGYEFVDTKLLQMYGRTGCLEDACQLFDIMPLRNLYSWTAILSVYVDHGLFEEAFLLFQELLYQEVPLDFFLFPLVLKICHGLGALELGRQVHGILLKHQFVSNIYVGNALLDMYGKCGSLDDAKKVLESMPNKDRVSWNSIITACAANGMVHEALDLLQNMSVSDVTPNLVSWSAVIAGFAQNGYDEEAIQLLYKMQVAGMEPNARTLASVIPSCARLRKLNLGKELHSYIIRHDSMSNAFVVNGLLDMYRRCGDMDGAFKIFSRVSRKCSASYNTMIAGYSENGNILKAKVLFDQMEQEGVERDRISWNTMISGYVDNFLFDEAFSMFQNLLKKGIAPDSFTLGSVLTACADMASIRQGKEIHTQAIVRGLQSNSFIGGAFVEMYFKCEDIEAARTAFDEVSERDVATWNALISGYARCNQIEKIQELLQKMTKDGFEPNVYTWNGILAGYVENSHYDLAMQLFTEMQNSYLRPDIYTVGIIVTACSKLATIQRGKQVHAYSIRAGHDSDVHIGAALVDMYAKCGSIKYSKLAYNRISDPDLVSHNAILTAYAMHGHGEEGISHFRIMLAGKVRPDHVTFLSVLSLCVHAGSVEMGHECFYLMETHNLTPTLKHYTCMVDLLSRAGKLKEAYEVMKKMPMEADPVMWSALLGGCFIHGEVALGEIAAKNLIELEPNNTGNYVLLANLYVSTGRWYDLAQIRQMMKDRGMQKSPGCSWIEDKDGIHVFLASDKTHKRTEEIYSTLDNLTCYIKKMHACN 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2723 855 Gene3D Tetratricopeptide repeat domain 456 598 IPR011990 GO:0005515
Sto9g2723 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 502 536 IPR002885 -
Sto9g2723 855 Gene3D Tetratricopeptide repeat domain 366 428 IPR011990 GO:0005515
Sto9g2723 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
Sto9g2723 855 Gene3D Tetratricopeptide repeat domain 229 365 IPR011990 GO:0005515
Sto9g2723 855 Gene3D Tetratricopeptide repeat domain 60 228 IPR011990 GO:0005515
Sto9g2723 855 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 644 845 - -
Sto9g2723 855 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 48 410 - -
Sto9g2723 855 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 377 644 - -
Sto9g2723 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Sto9g2723 855 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 377 644 - -
Sto9g2723 855 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 48 410 - -
Sto9g2723 855 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 644 845 - -
Sto9g2723 855 Pfam PPR repeat 131 156 IPR002885 -
Sto9g2723 855 Pfam PPR repeat 105 128 IPR002885 -
Sto9g2723 855 Pfam PPR repeat 339 363 IPR002885 -
Sto9g2723 855 Pfam PPR repeat 204 229 IPR002885 -
Sto9g2723 855 Pfam PPR repeat 505 534 IPR002885 -
Sto9g2723 855 Pfam PPR repeat 369 398 IPR002885 -
Sto9g2723 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 638 672 IPR002885 -
Sto9g2723 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 401 435 IPR002885 -
Sto9g2723 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 229 IPR002885 -
Sto9g2723 855 Pfam E motif 754 816 IPR046848 -
Sto9g2723 855 Pfam PPR repeat family 230 277 IPR002885 -
Sto9g2723 855 Pfam PPR repeat family 401 448 IPR002885 -
Sto9g2723 855 Pfam PPR repeat family 536 584 IPR002885 -
Sto9g2723 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 537 571 IPR002885 -
Sto9g2723 855 Pfam Pentacotripeptide-repeat region of PRORP 623 736 IPR033443 -
Sto9g2723 855 Gene3D Tetratricopeptide repeat domain 626 837 IPR011990 GO:0005515
Sto9g2723 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Sto9g2723 855 SUPERFAMILY TPR-like 129 791 IPR011990 GO:0005515
Sto9g2723 855 TIGRFAM PPR: pentatricopeptide repeat domain 712 737 IPR002885 -
Sto9g2723 855 TIGRFAM PPR: pentatricopeptide repeat domain 267 301 IPR002885 -
Sto9g2723 855 TIGRFAM PPR: pentatricopeptide repeat domain 539 572 IPR002885 -
Sto9g2723 855 TIGRFAM PPR: pentatricopeptide repeat domain 232 265 IPR002885 -
Sto9g2723 855 TIGRFAM PPR: pentatricopeptide repeat domain 403 437 IPR002885 -
Sto9g2723 855 TIGRFAM PPR: pentatricopeptide repeat domain 505 538 IPR002885 -
Sto9g2723 855 TIGRFAM PPR: pentatricopeptide repeat domain 369 401 IPR002885 -
Sto9g2723 855 MobiDBLite consensus disorder prediction 20 40 - -
Sto9g2723 855 MobiDBLite consensus disorder prediction 23 40 - -
Sto9g2723 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 129 163 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2723 Sto-Chr9 29112706 29115273 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2723 63 850 Glycoside Hydrolase AT3G49170 29.161 5.65e-122 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2723 - - qsu:112023721 1208.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2723 9 29112706 29115273 Sto9g2723 9 29112706 29115273 ECH