Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02620 ATGGCCAATGTTTCAATTCCACTCCCGCGAAACGGTTTGTCCATACGCAATTACTCAACGAAACGCCCCCGTTTCACCACTTCAGCTTCAACACTCAGAATTTCTTGCTCTGGAGTAGCTGAGTCAGATGGATCTGAGAACAAGGGAAGCTTACTTAATTTCAACGGAATCAAGGGCGTGGCCTGTGGTATTCTTGCAGCTTGCACTCTTACTTCTGCTGCATTTCCCGTTATTGCTGCTACCCAGAGGCTGCCCCCATTGTCAACTGAACCCAATCGCTGTGAGCGTGCATTTGTTGGCAACACAATCGGTCAGGCAAATGGTGTATATGACAAACCATTAGATCTCCGACTTTGTGATTTCACAAATGAAAAATCCAACCTCAAGGGGAAGTCCCTGTCTGCAGCACTCATGTCAGATGCTAAGTTTGATGGTGCTGACATGTCAGAAGTTGTAATGTCAAAGGCTTATGCTGTTGGTGCCAGCTTTAAAGGAGTGGACTTCTCAAATGCAGTCTTGGACCGTGTTAATTTTGGGAAAGCTGATCTTCAAGGAGCTGTATTTAAGAACACAGTATTGTCCGGCTCCACCTTTGATGATGCTAAGCTGGAAAATGCAGTTTTCGAGGACACAATCATTGGTTACATTGATCTTCAAAAGCTATGCACAAATAAGACCATCGGTGATGAAGGTAGAGCTGAACTAGGATGTCGATGA 717 0.4505 MANVSIPLPRNGLSIRNYSTKRPRFTTSASTLRISCSGVAESDGSENKGSLLNFNGIKGVACGILAACTLTSAAFPVIAATQRLPPLSTEPNRCERAFVGNTIGQANGVYDKPLDLRLCDFTNEKSNLKGKSLSAALMSDAKFDGADMSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGKADLQGAVFKNTVLSGSTFDDAKLENAVFEDTIIGYIDLQKLCTNKTIGDEGRAELGCR. 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02620 238 Pfam Pentapeptide repeats (8 copies) 173 210 IPR001646 -
Seca4g02620 238 Pfam Pentapeptide repeats (8 copies) 133 170 IPR001646 -
Seca4g02620 238 PANTHER THYLAKOID LUMENAL 17.4 KDA PROTEIN, CHLOROPLASTIC 7 238 IPR044195 -
Seca4g02620 238 Gene3D - 112 238 - -
Seca4g02620 238 SUPERFAMILY Pentapeptide repeat-like 117 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02620 Seca-Chr4 44921736 44924226 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02620 - - gmx:100785667 423.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02620 4 44921736 44924226 Seca4g02620 4 44921736 44924226 ECH