Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01924 ATGGGTAGCTTCAGCGAAGAAGAATACCGATTTTTCGATGCTCCAGAGGATATTGTGTCCATTTCTGATGCAAAATCCGATGGCACTGTCACATCCGACGGAGATTGTTGTTCAAGCTGCAGGATATTAAATGGTTTTGATTATGAAGTGTGGGCTGAGAACCCAAAGAGCGTGCAGGAGCGTCGGAGTAAGTTCAGGAAGTGGATGGGGCTGAGTTTGGATCAGATTACCTTTGAAAATTCAGTAGACTTATGTAGTCTAGAGCGGGCAGAAGAGATGAATAGACTTAATGATAGTAGTGGGGCTGTGACAACAACTTCCGGTTTTGAAGAGGAGTTTTGTTCGAGTCGGTCATCAATGTCTTGTTGGTCTTCTATGAATTCTTCTGAGGAGTTTGTTTCACTGGAGAACGGTAATTTGGACAAGTGGTTGGATCGTGATGGAGATCAAGAGGAGCATTGCGTGGAGATAGGTGATGGTAGAGGCGTGGGTTCAGATCATTTGATGGTATCCAAGGGGCCTGAGGATTCTGAAGACACGAATATTTTGGAAGGGAGGGTGAAGAAGACTAGAAGTAAAAGTAGTTGGTTCAGAAAATTACGTTCTATGACATGCATGATTGATAGCCAACATGAAGCTGATAATGGGATGCTAGAAGGGACTCGTGCATTCTCAGGGGGTAGGATTCAGAAAGTTAAGGTCCGACaatacaagaagaaaataaaggagCTTTCAGGTGTTTATATGGGGCAGGATATTCAAGCTCATGAAGGTTCAATTTTGACCATGAAGTTCAGTCCAGATGGTCAGTATCTTGCCAGTGCCGGCGAAGATGGGGTTGTGCGATTGTGGCAAGTGGTGGAGGATGAGAGGTGCGATGAAATTGACATCCCAGAAATTGACCCGTCCTCCATATACTTTACCGTGAATCATCTCTCTGAATTGACACCCCTGTTTATGGATAAGGAAAAAATTAGCAAGCAGAAGAGTCTGAAGAAAACATGTGATTCAGCTTGTGTCATTTTCCCTCCTAAGGTTTTCCGGTTATTGGAGAAACCATTGCATGAGTTCCATGGGCATAGAGGTGATATATTGGATCTCTCTTGGTCAAAGAATAATTATCTGCTGTCATCTTCAATTGACAAAACTGTTCGTCTATGGAAAGTGGGATATGATCATTGCCTGAAAGTTTTTTCACACAGTAATTATGTGACGTGCATACAATTCAATCCCGTGGatgataattatttcataagcGGATCTATAGATGGAAAAGTGCGCATCTGGGCAATTCCTGATTGTCATGTTGTTGATTGGATCGATATCAGAGAAATTGTGACTGCAGTGTGTTATCGACCTGATGGGCAGGGGGGGATCATTGGCTCTATGACAGGCAGTTGTCGCTTTTACAATGTAGCAGAGAATCGCCTGCAGTTAGATGCCCAACTATGCTTACTTGGTAAAAGAAAACTTCCTTGCCGAGGGATTACTGGCTTTCAGtaTCTTCCTCAAGATTCTAGCAAAGTTATGGTTACCGGTGCTGATTCACAAGTCAGAATCCTTCACGGGCTTAACGTGATTGGCAAATACAAAGGGCTTAGTGCAGGGAGCCAAGTTTCTGCATCTTTTACTTCAGATGGGAAACAGATTTTATCAGCCTGCGAAGACTCTAATATATACCTCTGGAATGTTAGCCAGGAAGAGTCCGTTCCAACAAAAGCCAAGAACATTAGGTCTTGCGAAAGGTTTTTTTCAAATGCATCTGTTGTGGCGCCTTGGTGTGGTTTGAAATCTCAAAATTCCGAAAATGAACACAACTTGGATGTCTTGGATCAAAGTTCTCCTCAAACTCTACGTCTCAATTCACCAGCTTGTTTTTCTCTGGGTCAAGAGTTTTTCTTGGAGTCTTTTCCCAAGGGATCCGCAACATGGCCTGAGGAGAATCTTCCTACTTCAAGCCCCAAGGCTAAAACGTCTGCACTACATAAATCACAATACAAGTTCTTTAAGTCTTCTTGCAAAAGTACCAGCAGTTCTCATGCTTGGGGTATGGTCATTGTGACTGCCGGCTTGGATGGACGGATAAAATCATTCCACAGTTATGGATTACCAGTCCCCGTTTA 2123 0.4258 MGSFSEEEYRFFDAPEDIVSISDAKSDGTVTSDGDCCSSCRILNGFDYEVWAENPKSVQERRSKFRKWMGLSLDQITFENSVDLCSLERAEEMNRLNDSSGAVTTTSGFEEEFCSSRSSMSCWSSMNSSEEFVSLENGNLDKWLDRDGDQEEHCVEIGDGRGVGSDHLMVSKGPEDSEDTNILEGRVKKTRSKSSWFRKLRSMTCMIDSQHEADNGMLEGTRAFSGGRIQKVKVRQYKKKIKELSGVYMGQDIQAHEGSILTMKFSPDGQYLASAGEDGVVRLWQVVEDERCDEIDIPEIDPSSIYFTVNHLSELTPLFMDKEKISKQKSLKKTCDSACVIFPPKVFRLLEKPLHEFHGHRGDILDLSWSKNNYLLSSSIDKTVRLWKVGYDHCLKVFSHSNYVTCIQFNPVDDNYFISGSIDGKVRIWAIPDCHVVDWIDIREIVTAVCYRPDGQGGIIGSMTGSCRFYNVAENRLQLDAQLCLLGKRKLPCRGITGFQYLPQDSSKVMVTGADSQVRILHGLNVIGKYKGLSAGSQVSASFTSDGKQILSACEDSNIYLWNVSQEESVPTKAKNIRSCERFFSNASVVAPWCGLKSQNSENEHNLDVLDQSSPQTLRLNSPACFSLGQEFFLESFPKGSATWPEENLPTSSPKAKTSALHKSQYKFFKSSCKSTSSSHAWGMVIVTAGLDGRIKSFHSYGLPVPV 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01924 707 ProSiteProfiles Trp-Asp (WD) repeats profile. 397 429 IPR001680 GO:0005515
Bva12g01924 707 PANTHER WD REPEAT DOMAIN 44 6 707 IPR040324 -
Bva12g01924 707 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 357 389 - -
Bva12g01924 707 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 6 707 - -
Bva12g01924 707 ProSiteProfiles Trp-Asp (WD) repeats profile. 540 572 IPR001680 GO:0005515
Bva12g01924 707 Gene3D - 218 489 IPR015943 GO:0005515
Bva12g01924 707 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 397 429 - -
Bva12g01924 707 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 253 286 - -
Bva12g01924 707 Gene3D - 529 624 IPR015943 GO:0005515
Bva12g01924 707 SUPERFAMILY WD40 repeat-like 252 696 IPR036322 GO:0005515
Bva12g01924 707 ProSiteProfiles Trp-Asp (WD) repeats profile. 357 389 IPR001680 GO:0005515
Bva12g01924 707 ProSiteProfiles Trp-Asp (WD) repeats profile. 253 286 IPR001680 GO:0005515
Bva12g01924 707 Pfam WD domain, G-beta repeat 394 429 IPR001680 GO:0005515
Bva12g01924 707 Pfam WD domain, G-beta repeat 352 388 IPR001680 GO:0005515
Bva12g01924 707 Pfam WD domain, G-beta repeat 254 284 IPR001680 GO:0005515
Bva12g01924 707 PRINTS G protein beta WD-40 repeat signature 272 286 IPR020472 -
Bva12g01924 707 PRINTS G protein beta WD-40 repeat signature 417 431 IPR020472 -
Bva12g01924 707 PRINTS G protein beta WD-40 repeat signature 375 389 IPR020472 -
Bva12g01924 707 SMART WD40_4 391 430 IPR001680 GO:0005515
Bva12g01924 707 SMART WD40_4 482 522 IPR001680 GO:0005515
Bva12g01924 707 SMART WD40_4 523 563 IPR001680 GO:0005515
Bva12g01924 707 SMART WD40_4 433 471 IPR001680 GO:0005515
Bva12g01924 707 SMART WD40_4 659 699 IPR001680 GO:0005515
Bva12g01924 707 SMART WD40_4 350 388 IPR001680 GO:0005515
Bva12g01924 707 SMART WD40_4 246 285 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01924 Bva-Chr12 15358658 15363669 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01924 - - gmx:100817209 940.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01924 12 15358658 15363669 Bva06g02997 06 18645777 18650978 ECH
Bva11g02251 11 18145443 18149866 Bva12g01924 12 15358658 15363669 ECH
Bva12g01924 12 15358658 15363669 Bva12g01924 12 15358658 15363669 ECH