Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g03001 ATGTCCACTCAACTGTTGGAATCTCTGTCTCGTCTACCACCAGAGCCACTTGCTCATCCTTCAAGAAAGCTTACAATACCAGCTAGCTTGTCCTTTCAAGGCTCAAAGTCCACACACCATCCCATGCCCATCGCTCATTCAACTAACCACCCTCGGTACTCTATACTTGGGGAACCAGTTAACTCAACAACTTACGCATTTATTCTTGAATCTTGTACGTGCCCGAGTTTCGGGAAGCAGGTGCATGCTCACTCCATTAAATTTGGGTTTCGGGGGCATGGGTTTGTAGAAACTAAATTGCTTCAGATGTATGGGAGTAATGGTTGTTTAGAGGATGCGTGCTTGCTGTTTGAGATAATGCCGCATAGGAGCCTGTATTCTTGGACGGCCATTCTGAGTGCTAATGTTGATCACGGGTGCTTTGAGGAAGCGTTCTTTCTCTTTGAACAGCTGCTATACGAAGAGATGCAATGGGATTTTTTTGTGTTCCCTGTGGTGTTAAAGATTTGCCATGGCCTTGGTGCTCTAGAATTAGGTAGAAAAGTACATGGGATTCTCTGGAAGCATCAGTTTGTGGAGAATTTATACGTAGGTAATGCTCTAATAGATATGTATGGTAAATGTGGAAGCTTAAATGATGCGAAGAAAGTTTTAGAAACAATGCCAAAAAGGGATTCTGTTTCGTGGAATTCTATTATTACTGCTTGTAGTGCCAACGGGATGGTATACGAGGCGTTGGACCTCTTACAGAATTTGTCTTCTTTGGGTGATTTAACACCTAATCTTGTTTCTTGGAGTGCTGTTATTGGAGGATTCTCACAAAATGGTTACGACATGGAAGCGATTGAAGTACTCTCTAGAATGCAAGCAGCAGGGCTTGAGCCAAATGCACGAACACTAGCAAGTGTTCTTCCTGCTTGTGCAAGGTTACAAAGGCTAAGCCTTGGGAAAGAACTGCATAGCTACATCATAAGACATGATTACATATCGAATGCTTTTGTTGTGAATGGATTAGTGGACATGTATAGAAGGTGTGGTGATATGAATAGttccttcaaaatattttccaagtTTTCTAGGAAATGTGCTGCGTCTTACAATACCATGATAGCTGGTTATTGTGAAAACGGCAACATCTCTAAGGCCAAGGAGTTGTTTCAtcagatggagcaagaaggtgtaGAGAGGGACAAAATATCATGGAATTCTATGATTTCAGGGTACGTGGACAATTTTCTGCTCGATGAAGCCTTCAGCTTGTTCCGAGGTTTACTAAAGGAAGGAATTAAACCTGATTCTTTCACTCTTGGAAGCATCCTTACTGCATGTGCTGATATGGCTTCCATTCGACAAGGGAAAGAGATACATTCCTATGCTATCGTTAAAGGTCTGCAATCCAATAGTTTTGTGGGTGGAGCTTTGGTAGAAATGTATTCTAAATGCCAAGACTTAGTGGCTGCTCAAATGGCTTTTGATGAAGTAAGTGAAAGGGACGTAGCAACTTGGAATGCTTTATTATCTGGCTATGCCCTCTgcaatgaaattgaaaagattgaaaaacttctccacaataTGAAAAGGGATGGTTTTGAGccaaataattatacatgGAATAGTCTTATAGCTGGCTATGTGGAAAATAACCATTACGATTCTGCAATGCAATTATTCACCGAAATGCAGGCCTCAAATTTGAGGCCTGACATATACACAGTTGGAATAATTTTAACAGCATGCTCCAGGTTGGCTACAGTCCACCGAGGAAAGCAGGTTCATGCATATTCGATAAAAGCTGGGTATGACACTGATGTCCATATCGGTGCTGCCCTGGTGGACATGTACGCGAAATGTGGCAGTATTAAGCATTGCCTTCTAGCTTATGGCAAGATATCAAACCCTGATTTGGTGTCCCACAATGCTATGCTCACTGCATATGCAATGCATGGACATGGGGAGGAAGGAATCGTTCTTTTCCGCAGAATGTTAGCTGGGAAAGTTAGACCAGACCATGTGACATTCCTGTCAgttctttcttcatgtgtTCACGCTGGATCAGTTGAGATAGGTCAGGAATGCTTTCATTTAATGGAAACTTTCAATTTGAGACCCACATTGAAGCATTATACATGTATGGTCGACCTCTTGAGTCGTGCAGGCCGGCTCAATGAAGCATATGAACTTATCAAGAAAATACCTATGGAAGCTGATTCAGTGATGTGGAGTGCTTTGCTTGGAGGATGTTTTATTCATGGTGAAGTTGCCTTAGGAGAAATTGCAGCAGAAAAAGTCATAAAGTTGGAGCCTGATAACACTGGAAACTATGTTTTATTAGCAAACTTGTATGCTTCTGCGGGGAGATGGTGCGATCTGGCACGAACTAGACAAAGGATGAAAGATAAAGGAATGCAAAAGAGTCCAGGATGCAGCTGGATAGAAGATAGAGATGGGGTTCATGTGTTTCTTGCAAGTGATGAGAGACACGAAAGAACAgaggaaatatattttactctgGATAAATTGACTAATTACATTAGAACAGATAACTGTTGTTCCATCTTTGATCAGTACTA 2570 0.3988 MSTQLLESLSRLPPEPLAHPSRKLTIPASLSFQGSKSTHHPMPIAHSTNHPRYSILGEPVNSTTYAFILESCTCPSFGKQVHAHSIKFGFRGHGFVETKLLQMYGSNGCLEDACLLFEIMPHRSLYSWTAILSANVDHGCFEEAFFLFEQLLYEEMQWDFFVFPVVLKICHGLGALELGRKVHGILWKHQFVENLYVGNALIDMYGKCGSLNDAKKVLETMPKRDSVSWNSIITACSANGMVYEALDLLQNLSSLGDLTPNLVSWSAVIGGFSQNGYDMEAIEVLSRMQAAGLEPNARTLASVLPACARLQRLSLGKELHSYIIRHDYISNAFVVNGLVDMYRRCGDMNSSFKIFSKFSRKCAASYNTMIAGYCENGNISKAKELFHQMEQEGVERDKISWNSMISGYVDNFLLDEAFSLFRGLLKEGIKPDSFTLGSILTACADMASIRQGKEIHSYAIVKGLQSNSFVGGALVEMYSKCQDLVAAQMAFDEVSERDVATWNALLSGYALCNEIEKIEKLLHNMKRDGFEPNNYTWNSLIAGYVENNHYDSAMQLFTEMQASNLRPDIYTVGIILTACSRLATVHRGKQVHAYSIKAGYDTDVHIGAALVDMYAKCGSIKHCLLAYGKISNPDLVSHNAMLTAYAMHGHGEEGIVLFRRMLAGKVRPDHVTFLSVLSSCVHAGSVEIGQECFHLMETFNLRPTLKHYTCMVDLLSRAGRLNEAYELIKKIPMEADSVMWSALLGGCFIHGEVALGEIAAEKVIKLEPDNTGNYVLLANLYASAGRWCDLARTRQRMKDKGMQKSPGCSWIEDRDGVHVFLASDERHERTEEIYFTLDKLTNYIRTDNCCSIFDQY 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g03001 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
Bva06g03001 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 194 224 IPR002885 -
Bva06g03001 856 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 507 640 - -
Bva06g03001 856 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 41 406 - -
Bva06g03001 856 TIGRFAM PPR: pentatricopeptide repeat domain 535 569 IPR002885 -
Bva06g03001 856 TIGRFAM PPR: pentatricopeptide repeat domain 227 255 IPR002885 -
Bva06g03001 856 TIGRFAM PPR: pentatricopeptide repeat domain 501 533 IPR002885 -
Bva06g03001 856 TIGRFAM PPR: pentatricopeptide repeat domain 365 397 IPR002885 -
Bva06g03001 856 TIGRFAM PPR: pentatricopeptide repeat domain 399 433 IPR002885 -
Bva06g03001 856 TIGRFAM PPR: pentatricopeptide repeat domain 263 297 IPR002885 -
Bva06g03001 856 TIGRFAM PPR: pentatricopeptide repeat domain 636 669 IPR002885 -
Bva06g03001 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 669 703 IPR002885 -
Bva06g03001 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
Bva06g03001 856 Gene3D Tetratricopeptide repeat domain 472 629 IPR011990 GO:0005515
Bva06g03001 856 Gene3D Tetratricopeptide repeat domain 630 832 IPR011990 GO:0005515
Bva06g03001 856 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 405 506 - -
Bva06g03001 856 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 638 841 - -
Bva06g03001 856 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 638 841 - -
Bva06g03001 856 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 507 640 - -
Bva06g03001 856 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 41 406 - -
Bva06g03001 856 Pfam E motif 750 812 IPR046848 -
Bva06g03001 856 Gene3D Tetratricopeptide repeat domain 79 175 IPR011990 GO:0005515
Bva06g03001 856 Gene3D Tetratricopeptide repeat domain 321 462 IPR011990 GO:0005515
Bva06g03001 856 Gene3D Tetratricopeptide repeat domain 176 255 IPR011990 GO:0005515
Bva06g03001 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 498 532 IPR002885 -
Bva06g03001 856 Gene3D Tetratricopeptide repeat domain 256 320 IPR011990 GO:0005515
Bva06g03001 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Bva06g03001 856 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 405 506 - -
Bva06g03001 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Bva06g03001 856 MobiDBLite consensus disorder prediction 1 21 - -
Bva06g03001 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 634 668 IPR002885 -
Bva06g03001 856 Pfam PPR repeat 501 530 IPR002885 -
Bva06g03001 856 Pfam PPR repeat 707 731 IPR002885 -
Bva06g03001 856 Pfam PPR repeat 671 700 IPR002885 -
Bva06g03001 856 Pfam PPR repeat 365 394 IPR002885 -
Bva06g03001 856 Pfam PPR repeat 126 152 IPR002885 -
Bva06g03001 856 Pfam PPR repeat 263 292 IPR002885 -
Bva06g03001 856 Pfam PPR repeat 636 662 IPR002885 -
Bva06g03001 856 Pfam PPR repeat 227 254 IPR002885 -
Bva06g03001 856 Pfam PPR repeat 199 224 IPR002885 -
Bva06g03001 856 Pfam PPR repeat 100 122 IPR002885 -
Bva06g03001 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 533 567 IPR002885 -
Bva06g03001 856 Pfam PPR repeat family 536 580 IPR002885 -
Bva06g03001 856 Pfam PPR repeat family 397 444 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g03001 Bva-Chr6 18674572 18677525 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g03001 58 845 Glycoside Hydrolase AT3G49170 29.161 1.67e-119 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g03001 - - qsu:112023721 1194.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g03001 06 18674572 18677525 Bva06g03001 06 18674572 18677525 ECH