Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0645 ATGGGTAGCTTCAGTGGAGACGAAGAATGTCGGTTTTTTGATGCTCAAGAGGATGTTGGGTCCATTACTGATGATGAAGGGGTATCCAAGGGTTTTGATTATGAAGTGTGGGTTCGGAGCCCGAGGAGTGTGAGAGAGCGTAGGAGCAAGTTTATGGAGAGGATGGGACTGAGTATGGATTGGATTGCCCTTGAAAATTCAGTGGATGCGTGTAGTGTTGAGTGTGAAGAGTTGATGGATAGAGTTAAACTAGAAGATGCTAGTGGTGCTGTGACCCGAACTTCTGTTTTTGAAGAGCAGTTTTGTTCAAGCCGGTCAATGTCTTGTTGGCATAGTGGGAATTCTTCAGAGGAGGGTTCAGTGGATGACTTGCCGTGTCAAGATGGGGATTTGGAGGGTAATGTGGATCAGGAGGGGAAACAGTGTAGGAAGATGAATGATGGAAGAGATCTGGATTCAGATCAGTTCGTGGTTGCGCGGGAACCTGAGGATTCTGAGAATGCCTCTGGGGTGTCTCCTTGTTTCCAAGGTAGAGAGGATAGGGAGAAGGATGTTGATGCTTTTGCCAGGAGGACGAATAGGGATAGAAAAGGTTGGTTCAGAAGATTGCGGTCGATGACGTGCATGATTGATAGGCAAGGGGAAGGTGATAATGGGAGAAGTGAAGGCAGTGGAGCAATGTCAGGGTCTAGGCTTCAGAAAGTTAAGGTCCGTCAGTCTAGGAAGCATATGAAAGAACTTTCGGCTCTTTACATGAGGCAAGATATCCAAGCGCATGAAGGTTCAATTTTGACCATGAAATTCAGTCCTGATGGGCAGTATCTTGCGAGCGGTGGTGAAGATGGGGTTGTGCGCTTGTGGCAAGTGGTTGAGGAGGATAGATGTAATGAAATTGACATTCCAGAAATTGATCCATCCTGCATTTACTTTACAGTGAATAATCTCTCTGAATTGACACCCCTGTTTATGGATAAGGAAAAAATTAGCAAACTGAAGAGTCTGAAAAAAACATCAGATTCAGCTTGTGTTGTTTTCCCCCCTAAAATCTTCCGGTTGTTGGAGAAACCATTGCATGAGTTTTGTGGGCATAGAGGTGAAGTTTTGGATCTCTCTTGGTCAAAGAATAATTATCTTCTGTCTTCTTCAGTTGACAAAACTGTCAGATTATGGAACGTGAATCACGACCATTGCTTGAAAGTTTTCTCACACAGTAATTATGTGACATGCATACAATTCAATCCTATGGATGATAATTATTTCATTAGTGGATCTATAGATGGAAAAGTGCGCATCTGGGAAATTCCTGATTGTCATGTTGTTGATTGGACTGACATTAAAGATATAGTTACTGCAGTATGTTATCGACCTGATGGGCAGGGAGGGATAATTGGCTCCTTGGCTGGCTATTGTCGGTTTTATAATGTATCAGAAAATCGCTTGCAGTTAGATACCCAACTATGCTTAATTGGTAAAAAGAAACTTACTGGCAGAGGGATAACTGGCTTTCAGTTTCTTCCACAAGATTCCAACAAAGTTATGGTTACCTGTGCTGATTCAAAAGTCAGAATCCTTGACGGGCTTCATGTGATTGGCAAATACAAAAGCCTTAGCACGGGGAGTCCATTGTGTGCATCCTTTACTTCTGATGGGAAACATATTTTATCAGCATGTAAAGACTCTAATGTATATCTATGGAATATTAGTGAGGAACAGTCTAATCCCATGAAAGCTAGGAAGATTAGGTCTTGCGAGCAGTTTTTCTCAAATGCATCTGTTGCAGTACCTTGGCATGGTTTGAAATCTCTAAATCCTGAAAATGAACATCAATTGGATGTCTTGGATAAAAAATCACCCCAAGTTATACATCTCAATCCACCTACTTCATTCTCTCTGAGTCAAGAGTTTTTCTTGGGGTCTTTTCCTAAGGGATCTGCAACATGGCCTGAGGAAAAACTTCCTATTTCAAGCTCCAAATCTAAAACATCAATGATCCATAAATCTGAATACAAGTTTTTGAAATCTTCTTGTAAGAGTACCTCCTCTGCCCATGCATGGGGTATGGTCATTGTCACTGCAGGTTGGGATGGTAGGATTAAATCATTCCACAATTATGGGTTACCTATACCCGTTTGA 2133 0.4205 MGSFSGDEECRFFDAQEDVGSITDDEGVSKGFDYEVWVRSPRSVRERRSKFMERMGLSMDWIALENSVDACSVECEELMDRVKLEDASGAVTRTSVFEEQFCSSRSMSCWHSGNSSEEGSVDDLPCQDGDLEGNVDQEGKQCRKMNDGRDLDSDQFVVAREPEDSENASGVSPCFQGREDREKDVDAFARRTNRDRKGWFRRLRSMTCMIDRQGEGDNGRSEGSGAMSGSRLQKVKVRQSRKHMKELSALYMRQDIQAHEGSILTMKFSPDGQYLASGGEDGVVRLWQVVEEDRCNEIDIPEIDPSCIYFTVNNLSELTPLFMDKEKISKLKSLKKTSDSACVVFPPKIFRLLEKPLHEFCGHRGEVLDLSWSKNNYLLSSSVDKTVRLWNVNHDHCLKVFSHSNYVTCIQFNPMDDNYFISGSIDGKVRIWEIPDCHVVDWTDIKDIVTAVCYRPDGQGGIIGSLAGYCRFYNVSENRLQLDTQLCLIGKKKLTGRGITGFQFLPQDSNKVMVTCADSKVRILDGLHVIGKYKSLSTGSPLCASFTSDGKHILSACKDSNVYLWNISEEQSNPMKARKIRSCEQFFSNASVAVPWHGLKSLNPENEHQLDVLDKKSPQVIHLNPPTSFSLSQEFFLGSFPKGSATWPEEKLPISSSKSKTSMIHKSEYKFLKSSCKSTSSAHAWGMVIVTAGWDGRIKSFHNYGLPIPV* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0645 710 MobiDBLite consensus disorder prediction 113 132 - -
Apr1g0645 710 ProSiteProfiles Trp-Asp (WD) repeats profile. 360 400 IPR001680 GO:0005515
Apr1g0645 710 PRINTS G protein beta WD-40 repeat signature 275 289 IPR020472 -
Apr1g0645 710 PRINTS G protein beta WD-40 repeat signature 378 392 IPR020472 -
Apr1g0645 710 PRINTS G protein beta WD-40 repeat signature 420 434 IPR020472 -
Apr1g0645 710 ProSiteProfiles Trp-Asp (WD) repeats profile. 545 575 IPR001680 GO:0005515
Apr1g0645 710 ProSiteProfiles Trp-Asp (WD) repeats profile. 400 434 IPR001680 GO:0005515
Apr1g0645 710 SMART WD40_4 526 566 IPR001680 GO:0005515
Apr1g0645 710 SMART WD40_4 353 391 IPR001680 GO:0005515
Apr1g0645 710 SMART WD40_4 249 288 IPR001680 GO:0005515
Apr1g0645 710 SMART WD40_4 435 474 IPR001680 GO:0005515
Apr1g0645 710 SMART WD40_4 665 702 IPR001680 GO:0005515
Apr1g0645 710 SMART WD40_4 394 433 IPR001680 GO:0005515
Apr1g0645 710 SMART WD40_4 485 525 IPR001680 GO:0005515
Apr1g0645 710 Gene3D - 215 298 IPR015943 GO:0005515
Apr1g0645 710 Gene3D - 349 492 IPR015943 GO:0005515
Apr1g0645 710 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 400 434 - -
Apr1g0645 710 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 360 393 - -
Apr1g0645 710 Gene3D - 493 702 IPR015943 GO:0005515
Apr1g0645 710 PANTHER WD REPEAT DOMAIN 44 7 709 IPR040324 -
Apr1g0645 710 MobiDBLite consensus disorder prediction 212 238 - -
Apr1g0645 710 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 7 709 - -
Apr1g0645 710 Pfam WD domain, G-beta repeat 257 287 IPR001680 GO:0005515
Apr1g0645 710 Pfam WD domain, G-beta repeat 355 391 IPR001680 GO:0005515
Apr1g0645 710 Pfam WD domain, G-beta repeat 397 432 IPR001680 GO:0005515
Apr1g0645 710 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 256 289 - -
Apr1g0645 710 ProSiteProfiles Trp-Asp (WD) repeats profile. 256 289 IPR001680 GO:0005515
Apr1g0645 710 ProSitePatterns Trp-Asp (WD) repeats signature. 378 392 IPR019775 -
Apr1g0645 710 SUPERFAMILY WD40 repeat-like 251 700 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0645 Apr-Chr1 7755717 7761037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0645 254 448 Miscellaneous Gene Families AT5G08390 22.816 5.39e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0645 - - gmx:100807177 1136.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1310 2 19269863 19274315 Apr1g0645 1 7755717 7761037 ECH
Apr1g0645 1 7755717 7761037 Apr1g0645 1 7755717 7761037 ECH