Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02997 ATGGATAGCTTCagcgaagaagaagaatgtcGATTTTTTGATGCTTCCGATGATATTGTGTCCACTGATGCAAAATCCGATGGCACTGTCACACCCGACGCAAATTGTTGTTCAAGCAGCGGCATATCGAGTGGCTTTGATTACGAAGTGTGGATTCGGAGCCCAAGGAGTGTGCAGGAACGTCGGAGCAAGTTCAGGGAGCGGATGGGGCTGAGTTTGGATCAAATTGCCCTTGAAAATTCAGCAGACGAATGTAGTGTAGAGCGAGAAGAAGAGATGAACAGGCTTAATGATAGTAGTGGAACTATGACAACAACTTCCGGTTTTGAAGATGAGTTTTGTTCAAGTCGGTCATCAGTGTCTTGTTGGTCTACTATGAATTCTTCTGAGGAGTTTGGTTCACTGGAGAACGGAAATTTGGACAAGGGGTTGGACTGTGATGGAGATCAACTGGAGCATTCTGTGACGATCAGTGATCATAGAATTGCGGGTTCAGATCGGTTGATAGTTTCCGAGGAGCGTGAGGATTCTGAGAACACAAATACTTTGGAAGggaggatgaagaagaataGAAGGAGTTGGTTCAGAAGATTACGTTCTATAACATGCATGGTTGATCTGCAACGCGAAGCTGATAATGGGATGCTAGAAGGGGCTTGTGCTTTCTCAGGGTGTAGGATTCAGAAAGTTAAGGTCCGCCAATACAGGAAGCAAACAAAGGAGCTTTCTGGTCTTTACATGGGGCAGGATATTCAAGCTCATGAAGGTTCTATTTTGACCATGAAATTCAGTCCTGATGGTCATTACCTTGCAAGTGCTGGCGAAGATGGGGTTGTGCGATTGTGGCAAGTGGTGGAGGATGAGAGGTGTAATGAAATTGACATCCCAGCAGTTGACCCTTCCTGCGTATACTTCACAGTGAATCATCTCTCTCAGCTGACACCCCTATTTATGGATAAGGAAAAAATTAGCAAACAGAAGACTCTGAAGAAAACATCTGATTCAGCTTGTGTCATTTTCCCTCCTAAGATCTTCCGGTTACTGGAGAAACCATTGCATGAGTTCCATGGGCATAAAGGTGATATATTGGATCTCTCTTGGTCAAGGAATAATTATCTGCTGTCATCTTCAGTTGATAAGACTGTTCGTCTATGGCGAGTGGGATATGATCATTGCCTTAAAGTTTTTTCACACAGTAATTATGTGACATGCATACAATTCAATCCCGTGGatgataattatttcataagcGGATCCATAGATGGAAAAGTGCGCATCTGGGCAATTCCTGATTGTCATGTTGTTGATTGGACTGATGTCAGAGAAATTGTGACTGCAGTGTGTTATCGACCAGATGGGCAGGGGGGAATCATTGGCTCTTTGACAGGCAGTTGTCGCTTATACAATGTAGCAGAGAACCGCCTGCAATTGGATGCCCAACTATGCTTACTTGGTAAAAAGAAACTTCCTTGTAGGGGGATTACTGGCTTTCAGtttCTTCCTCAAGATTCTAGCAAAGTTATGGTTACCAGTGCTGATTCACATGTCAGAATCCTTAATGGGCTTAATGTGATTGGCAAATACAAAGGCTTTAGTGCAGGGAGCCAAGTTTCTGCATCTCTTACTTCAGATGGGAAACACATTTTATCAGCCTGCGAAGACTCTAATGTATATCTATGGAATGTTAGTCTGGAAGAGTCTACTCCAACAAAAGCTAAGAGCGTTAGGTCTTGCGaaaaatttttgtcaaatGCATCTGTTGTGGTACCTTGGTGTGGTTTGAAATctcaaaattctgaaaatgaaCATCACCCGGATGTATTGGATGGAAGTTCACCTCAAATTCTACGTCTCAATACACCAGCTTGTTTTTCTCTTGGTCCAGAGTTTTTCTTGGAGTCTTTTCCCAAGGGATCCGCAACATGGCCTGAGGAAAAACTTCCTACTTCAAGCCCCAAGGCTAAAACGTCTGCATTACATAAATCACAATACAAGTTCTTGAAGTCCTCCTGCAAGAGTACCTCTAGTTCTCATGCCTGGGGTATGGTCATTGTGACTGCAGGCTGGGATGGGCGGATAAAATCATTCCACAATTACGGGTTACCTATCCCCGTTTG 2117 0.4214 MDSFSEEEECRFFDASDDIVSTDAKSDGTVTPDANCCSSSGISSGFDYEVWIRSPRSVQERRSKFRERMGLSLDQIALENSADECSVEREEEMNRLNDSSGTMTTTSGFEDEFCSSRSSVSCWSTMNSSEEFGSLENGNLDKGLDCDGDQLEHSVTISDHRIAGSDRLIVSEEREDSENTNTLEGRMKKNRRSWFRRLRSITCMVDLQREADNGMLEGACAFSGCRIQKVKVRQYRKQTKELSGLYMGQDIQAHEGSILTMKFSPDGHYLASAGEDGVVRLWQVVEDERCNEIDIPAVDPSCVYFTVNHLSQLTPLFMDKEKISKQKTLKKTSDSACVIFPPKIFRLLEKPLHEFHGHKGDILDLSWSRNNYLLSSSVDKTVRLWRVGYDHCLKVFSHSNYVTCIQFNPVDDNYFISGSIDGKVRIWAIPDCHVVDWTDVREIVTAVCYRPDGQGGIIGSLTGSCRLYNVAENRLQLDAQLCLLGKKKLPCRGITGFQFLPQDSSKVMVTSADSHVRILNGLNVIGKYKGFSAGSQVSASLTSDGKHILSACEDSNVYLWNVSLEESTPTKAKSVRSCEKFLSNASVVVPWCGLKSQNSENEHHPDVLDGSSPQILRLNTPACFSLGPEFFLESFPKGSATWPEEKLPTSSPKAKTSALHKSQYKFLKSSCKSTSSSHAWGMVIVTAGWDGRIKSFHNYGLPIPV 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02997 705 Gene3D - 483 579 IPR015943 GO:0005515
Bva06g02997 705 ProSiteProfiles Trp-Asp (WD) repeats profile. 251 292 IPR001680 GO:0005515
Bva06g02997 705 Gene3D - 6 295 IPR015943 GO:0005515
Bva06g02997 705 PANTHER WD REPEAT DOMAIN 44 5 704 IPR040324 -
Bva06g02997 705 ProSiteProfiles Trp-Asp (WD) repeats profile. 395 427 IPR001680 GO:0005515
Bva06g02997 705 SUPERFAMILY WD40 repeat-like 249 695 IPR036322 GO:0005515
Bva06g02997 705 PRINTS G protein beta WD-40 repeat signature 373 387 IPR020472 -
Bva06g02997 705 PRINTS G protein beta WD-40 repeat signature 415 429 IPR020472 -
Bva06g02997 705 PRINTS G protein beta WD-40 repeat signature 270 284 IPR020472 -
Bva06g02997 705 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 251 284 - -
Bva06g02997 705 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 5 704 - -
Bva06g02997 705 Gene3D - 348 482 IPR015943 GO:0005515
Bva06g02997 705 Pfam WD domain, G-beta repeat 252 282 IPR001680 GO:0005515
Bva06g02997 705 Pfam WD domain, G-beta repeat 350 385 IPR001680 GO:0005515
Bva06g02997 705 Pfam WD domain, G-beta repeat 392 427 IPR001680 GO:0005515
Bva06g02997 705 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 355 387 - -
Bva06g02997 705 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 395 427 - -
Bva06g02997 705 ProSiteProfiles Trp-Asp (WD) repeats profile. 355 387 IPR001680 GO:0005515
Bva06g02997 705 SMART WD40_4 244 283 IPR001680 GO:0005515
Bva06g02997 705 SMART WD40_4 480 520 IPR001680 GO:0005515
Bva06g02997 705 SMART WD40_4 389 428 IPR001680 GO:0005515
Bva06g02997 705 SMART WD40_4 521 561 IPR001680 GO:0005515
Bva06g02997 705 SMART WD40_4 348 386 IPR001680 GO:0005515
Bva06g02997 705 SMART WD40_4 430 469 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02997 Bva-Chr6 18645777 18650978 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02997 - - gmx:100817209 997.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01924 12 15358658 15363669 Bva06g02997 06 18645777 18650978 ECH
Bva11g02251 11 18145443 18149866 Bva06g02997 06 18645777 18650978 ECH
Bva06g02997 06 18645777 18650978 Bva06g02997 06 18645777 18650978 ECH