Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1316 ATGATGAGTAGCTTAAGTGAAAATGAGGATGAGCAATACCAATATTTCGATGCCCATGATGATATGGATGCTGCATCGCTGTCAGATTCCAGTTCTGATTGCAATGACAATCCCAATTCTAGCTCTGGTTTCAATAATTATGCTTCCAGAGCTTTTCAATATGATGTATGGGCTGGGAGCCCAGGAAGCGTGAAAGAGCGTCGTAACAAGTTCTTGAATTGGATGGGGTTGAGCTTAGATAGGTTTTCATGCGATAATTCTGTAGATGTATGTAGTGATTCATTGGGAGGAGGGGTTGATAGGGTTAGAGAGAGTAGTGGGGCGGTGTTGAGAACCTTGGGTTTTGAGGATGAGTTTTGTTCTAGTCGGTCCTCCATGTCACGTTGGTCGAATGAGCAGGATGAGTCTGGTTTGCAGGAGAAATTTGTATGTAGAATTGGGAATTTGGATGTTGGAGCAGAGTTTGATGTGGATGAAATGGGGGAGGGTAGTGAGGTGAGTGAATTTCGAGAAGTGGGTTTGGACCGATTGGTGACAATTAATGAATGTCAAAACATTTCTGATTCATTGTTGTCTTCCTCGGTCCAGCAAGTCATTCAAAGGGAAATTGAAGAGGCAAGCAATCCAGTGGGTGCAGCAAAGAGAGTCAAGAAGGGCTGGTTGAGTAGATTGCGTTCCATGTCTTGCATCATGGATAGGCATGGAGAAATTCATAACTTGACGACTAATGACACCAATCCAATTCCGGGGGCCAGGATACAGAGAGTCAGGGTTCGTCAATGCAGGAAGCAGATGAAGGAACTTTCGGCTCTATATAAGGGACAAGATATTCAGGCCCATGAGGGTTCAATCTTGTCAATGAAATTCAGCCCGGATGGGAAGTACCTCGCCAGCGCAGGTGAAGATGGGATTGTTCGGATATGGCAAGTGGTGGAGGATGAGAGATCAAATGATCATGACATTCCGGAAATAGACCCAATGTGCATATACTTCACAGTGAATCATCTTTCTGAATTGACACCCCTCTTTGCCGAAAAAGAGAAACTGAGCAAATTGAGGAGCCTGAGGAAAACATCAGACTCAGCTTGTGTCATTTTCCCACCAAAAGTCTTCAGGATATTGGAGAAACCATTGCATGAGTTCCATGGGCACAGCAGCGAGATCTTGGACCTCTCATGGTCAAATAACAATTATCTACTTTCTTCATCAATTGATAAAACTGTCCGTCTGTGGCGAGTGGGATGCGACCATTGCCTCAAAATTTTTTCACATAATAATTATGTGACATGCGTTCAGTTTAACCCTGTGGATGATAATTACTTCATCAGTGGATCAATAGATGGAAAAGTTCGGATTTGGGCAATTCCTGGTTGCCAAGTTGTTGATTGGACTGATATAAGAGAAATGGTCACTGCAGTGTGCTATCGCCCTGACGGGCAGGGAGGGATTGTTGGCTCTATGACAGGCACTTGCCGCTTTTACAATGTATCAGATAATCACTTGCAACTGGAATCTCAGATGTGCTTACATGGTAAAAAGAAATCACTCTGCAAGAGGATTACCGGCTTCCAGTTCTCTCCACAAGACCCTAGCACGGTAATGGTTACATGTGCAGATTCACAAGTCAGAATTCTCCATGGGACCAATGTGATTGGGAAATACAAGGGCCTCCGTAATGCAGGAAACCAGATGTCTGCATCTTTCACCTCAGACGGAAAGCATATAGTTTCAGCATGTGATGATTCCAACGTCTATGTATGGAACTGCAGTAATGAAGGAGAGCCTGCTCTCTCCCAATCAAAAAGCATTAGGGCGTTTGAGCACTTCCTGACCAATGCATCAGTTGCAATACCATGGTGTGGTATGAAATATGGGAACCCTGAAAATGGATGGCAATTTCATGCTCTGGATGAGAGTTCACCCAACACTCTGCCTTTTCCTTCACCTGCTTCATTTTCCCTGAGCCAAGAATTCTTCTCAGAATCTTTTCCCAAGGGATCCGCAACATGGCCAGAGGAAAAACTTCCTACTTCAAGCCTGGTGTCTGTTCCATCTAAAATCCATAAATCTGAACATAAATTTTTGAAAGCTTGCCAGAGCACATCCAGTTCTCATGCATGGGGTCTTGTCATTGTGACTGCAGGCTGGGATGGACGAATCAGGTCATTCCACAATTATGGGTTACCGGCACCTCTCTAA 2199 0.4429 MMSSLSENEDEQYQYFDAHDDMDAASLSDSSSDCNDNPNSSSGFNNYASRAFQYDVWAGSPGSVKERRNKFLNWMGLSLDRFSCDNSVDVCSDSLGGGVDRVRESSGAVLRTLGFEDEFCSSRSSMSRWSNEQDESGLQEKFVCRIGNLDVGAEFDVDEMGEGSEVSEFREVGLDRLVTINECQNISDSLLSSSVQQVIQREIEEASNPVGAAKRVKKGWLSRLRSMSCIMDRHGEIHNLTTNDTNPIPGARIQRVRVRQCRKQMKELSALYKGQDIQAHEGSILSMKFSPDGKYLASAGEDGIVRIWQVVEDERSNDHDIPEIDPMCIYFTVNHLSELTPLFAEKEKLSKLRSLRKTSDSACVIFPPKVFRILEKPLHEFHGHSSEILDLSWSNNNYLLSSSIDKTVRLWRVGCDHCLKIFSHNNYVTCVQFNPVDDNYFISGSIDGKVRIWAIPGCQVVDWTDIREMVTAVCYRPDGQGGIVGSMTGTCRFYNVSDNHLQLESQMCLHGKKKSLCKRITGFQFSPQDPSTVMVTCADSQVRILHGTNVIGKYKGLRNAGNQMSASFTSDGKHIVSACDDSNVYVWNCSNEGEPALSQSKSIRAFEHFLTNASVAIPWCGMKYGNPENGWQFHALDESSPNTLPFPSPASFSLSQEFFSESFPKGSATWPEEKLPTSSLVSVPSKIHKSEHKFLKACQSTSSSHAWGLVIVTAGWDGRIRSFHNYGLPAPL* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1316 732 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 381 413 - -
Vvi16g1316 732 Gene3D - 261 608 IPR015943 GO:0005515
Vvi16g1316 732 SMART WD40_4 502 546 IPR001680 GO:0005515
Vvi16g1316 732 SMART WD40_4 688 724 IPR001680 GO:0005515
Vvi16g1316 732 SMART WD40_4 456 495 IPR001680 GO:0005515
Vvi16g1316 732 SMART WD40_4 415 454 IPR001680 GO:0005515
Vvi16g1316 732 SMART WD40_4 374 412 IPR001680 GO:0005515
Vvi16g1316 732 SMART WD40_4 547 588 IPR001680 GO:0005515
Vvi16g1316 732 SMART WD40_4 270 309 IPR001680 GO:0005515
Vvi16g1316 732 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 277 310 - -
Vvi16g1316 732 PANTHER WD REPEAT DOMAIN 44 7 729 IPR040324 -
Vvi16g1316 732 ProSiteProfiles Trp-Asp (WD) repeats profile. 565 588 IPR001680 GO:0005515
Vvi16g1316 732 SUPERFAMILY WD40 repeat-like 277 722 IPR036322 GO:0005515
Vvi16g1316 732 PRINTS G protein beta WD-40 repeat signature 296 310 IPR020472 -
Vvi16g1316 732 PRINTS G protein beta WD-40 repeat signature 441 455 IPR020472 -
Vvi16g1316 732 PRINTS G protein beta WD-40 repeat signature 399 413 IPR020472 -
Vvi16g1316 732 ProSiteProfiles Trp-Asp (WD) repeats profile. 277 318 IPR001680 GO:0005515
Vvi16g1316 732 ProSiteProfiles Trp-Asp (WD) repeats profile. 421 453 IPR001680 GO:0005515
Vvi16g1316 732 ProSiteProfiles Trp-Asp (WD) repeats profile. 381 413 IPR001680 GO:0005515
Vvi16g1316 732 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 421 453 - -
Vvi16g1316 732 Pfam WD domain, G-beta repeat 278 308 IPR001680 GO:0005515
Vvi16g1316 732 Pfam WD domain, G-beta repeat 418 453 IPR001680 GO:0005515
Vvi16g1316 732 Pfam WD domain, G-beta repeat 376 411 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1316 Vvi-Chr16 21691632 21695112 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1316 - - vvi:100245187 1418.68