Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03140 ATGGATAGCTTCAGTGAAGATGAAGAATGTCCATTCTTTGATGCAATATCAGATGGTACTGACACCCCTGAAGCTAATAAGGATGTGGTCTTGAATGACTTTGGGTATCAAGTTTGGATTCGGAGTCCCCCTAGTGTTCATGAGCGCAGGATTAATTTTATGAAGTGGATGGGACTCAATAAGGATCAAGTTACCCTAGAGAATTCGGTAGATGTTGATGGTATGGAAGGGGATATAGATATGATGGAAACAAGAAGTTCTTGTTTCAAGGAGGAGGTTTGTTCGAATCGGCCTTCGGTATCTTGTTTGTCAAGGATGGATTCTTCAGAGGAGTTTAATTTGGTGGACACTATGCCTTGCCGAGATGGGAGATTGGAGAGTGGAGTGAGGTGGAATCTGGATCCGGTGGGGCTATACAGGGAAAGGAATGATGGTGGAAGAAGTGCAGGCTCGGATCAGCGAGTTGTAGCCGAGGAATGCGAAGATTCTGAGTACTTGTTTTGTGTCTCTTCGAATTTCCAGCATGCGAAGAAGGACATAGATGCCTTGAAGCAGAGGTCCAAGAGGAACAATAAGGGTTGGTTCAAAAGATTTGGTTCAATGAGTTGCATGGTTGATAGGCAAGGGGAATCTGATAGCAGAAGACACGATGGCGGATGTGTGTTCTCAGGGCCAAATAGGATTCAGAAGGTTAAGGTCCGGCAATGCCGGAAGCAAACAAAGGAACTTTCAGCTCTTTACATGGGCCAAGATATTCAAGCACATAGAGGCTCAATCTTGACCATGAAATTCAGCCCTGACGGCCGATTTCTTGCCAGTGCCGGCGAAGATGGCATTGTGAGATTGTGGAAAGTGGTTGAGGACGAGACATGTAACGAAGTTGACATTCCAGAAGTTGATCCATCCTGCATTTACTTTACAGTGAATAATCTATCTGAATTAACACCCTTATTTCTGGAAAAGGAGAAATTGAGCAAAGTGAAAGGCCTGAATAAAACATCCGATTCGGCTTGCATTATTTTCCCTCCCAAGGTCTTTAGGCTGTTGGAGAAACCATTGCATGAGTTCCATGGTCATGAAGGTGAAATTCTGGATCTTTCTTGGTCAAACAATAATTGTCTGCTGTCATCTTCAGTTGACAAAACTGTCCGTCTATGGCAAGTGGGACACGACTTCTGCTTGAAAGTTTTTCCACATAGTAACTATGTGACATGCATACAATTCAATCCTGTGGATGATAATTATTTCATCAGTGGATCTATCGATGGAAAAGTTCGCATCTGGGAAGTTCCTGATTGTCATGTTGTTGATTGGACTGATATCCGGGAAATTGTGACTGCAGTTTGTTATCGGCCGAATGGTCAGGGAGGGATTATTGGGTCCATGACAGGCAATTGCCGGTTTTACACTCTATCAGAGAATCACTTACAGTTAGATTCCCAGTTATGCTTGCTTGGTAAAAAGAAACTTCCTTGCAGAGGAATAACTGGTTTTCAGTTTCTTCCACAAGATTCTAACAAAGTTATGGTTACTTGTGCTGATTCAAAAGTCAGAATCCTTGATGGGCTTAATGTGGTTAGTAAATACGAAGGCCTTAGTGCAGCGGGACAAATGTCTGCATCTGTTACTTCGGATGGGAAGCATATTTTGTCGGCATGCGAAGACTCTAATGTATATCTGTGGAATGTTTCTGACAACGAGTCTAGCTCCACAAAAGCGAAGAAGATTAAGTCCTGCGAGCGATTCTTTTCGAATGCATCGGTCGCAGTACCTTGGTGTGGTTTTGAAAGTGCTCGCCAATTAGATTTCTTCGCCAAGGGGTCACCACAAGCAATGTGTCTCAACCCTGCCGCTTCATTTTCTCTAAGTCGAGATATCTCCTCGGAGTCTCTTCCCAAAGGATCTGCGACTTGGCCTGAGGAGAAACTTCCTATTTCAAGCCCCAAGGCTAAAATATCATCAATGCATAAATCCGCATACAAGTTCTTGAAATCTTCTTGCAAGTGCACATCCAATTGTCATGCATGGGGTCTGGTTATTTTGACAGCCGGCTGGGATGGCCGGATAAAATCGTTCCACAATTATGGGTTGCCAGTACTAGTTTAA 2106 0.4359 MDSFSEDEECPFFDAISDGTDTPEANKDVVLNDFGYQVWIRSPPSVHERRINFMKWMGLNKDQVTLENSVDVDGMEGDIDMMETRSSCFKEEVCSNRPSVSCLSRMDSSEEFNLVDTMPCRDGRLESGVRWNLDPVGLYRERNDGGRSAGSDQRVVAEECEDSEYLFCVSSNFQHAKKDIDALKQRSKRNNKGWFKRFGSMSCMVDRQGESDSRRHDGGCVFSGPNRIQKVKVRQCRKQTKELSALYMGQDIQAHRGSILTMKFSPDGRFLASAGEDGIVRLWKVVEDETCNEVDIPEVDPSCIYFTVNNLSELTPLFLEKEKLSKVKGLNKTSDSACIIFPPKVFRLLEKPLHEFHGHEGEILDLSWSNNNCLLSSSVDKTVRLWQVGHDFCLKVFPHSNYVTCIQFNPVDDNYFISGSIDGKVRIWEVPDCHVVDWTDIREIVTAVCYRPNGQGGIIGSMTGNCRFYTLSENHLQLDSQLCLLGKKKLPCRGITGFQFLPQDSNKVMVTCADSKVRILDGLNVVSKYEGLSAAGQMSASVTSDGKHILSACEDSNVYLWNVSDNESSSTKAKKIKSCERFFSNASVAVPWCGFESARQLDFFAKGSPQAMCLNPAASFSLSRDISSESLPKGSATWPEEKLPISSPKAKISSMHKSAYKFLKSSCKCTSNCHAWGLVILTAGWDGRIKSFHNYGLPVLV 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03140 701 Pfam WD domain, G-beta repeat 393 428 IPR001680 GO:0005515
Aip06g03140 701 Pfam WD domain, G-beta repeat 253 284 IPR001680 GO:0005515
Aip06g03140 701 Pfam WD domain, G-beta repeat 351 386 IPR001680 GO:0005515
Aip06g03140 701 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 356 388 - -
Aip06g03140 701 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 6 700 - -
Aip06g03140 701 Gene3D - 234 592 IPR015943 GO:0005515
Aip06g03140 701 ProSiteProfiles Trp-Asp (WD) repeats profile. 252 293 IPR001680 GO:0005515
Aip06g03140 701 PANTHER WD REPEAT DOMAIN 44 6 700 IPR040324 -
Aip06g03140 701 ProSiteProfiles Trp-Asp (WD) repeats profile. 396 430 IPR001680 GO:0005515
Aip06g03140 701 PRINTS G protein beta WD-40 repeat signature 271 285 IPR020472 -
Aip06g03140 701 PRINTS G protein beta WD-40 repeat signature 374 388 IPR020472 -
Aip06g03140 701 PRINTS G protein beta WD-40 repeat signature 416 430 IPR020472 -
Aip06g03140 701 SMART WD40_4 522 562 IPR001680 GO:0005515
Aip06g03140 701 SMART WD40_4 431 470 IPR001680 GO:0005515
Aip06g03140 701 SMART WD40_4 481 521 IPR001680 GO:0005515
Aip06g03140 701 SMART WD40_4 245 284 IPR001680 GO:0005515
Aip06g03140 701 SMART WD40_4 390 429 IPR001680 GO:0005515
Aip06g03140 701 SMART WD40_4 349 387 IPR001680 GO:0005515
Aip06g03140 701 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 396 430 - -
Aip06g03140 701 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 252 285 - -
Aip06g03140 701 ProSiteProfiles Trp-Asp (WD) repeats profile. 539 571 IPR001680 GO:0005515
Aip06g03140 701 ProSiteProfiles Trp-Asp (WD) repeats profile. 356 388 IPR001680 GO:0005515
Aip06g03140 701 SUPERFAMILY WD40 repeat-like 251 691 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03140 Aip-Chr6 126969245 126974264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03140 250 444 Miscellaneous Gene Families AT5G08390 23.000 2.15e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03140 - - gmx:100817209 920.228
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g02747 07 112527450 112532140 Aip06g03140 06 126969245 126974264 ECH
Aip03g02983 03 86529395 86533157 Aip06g03140 06 126969245 126974264 ECH
Aip06g03140 06 126969245 126974264 Aip06g03140 06 126969245 126974264 ECH